Gene omics information
Query gene ID Os03g0786800 Gene name Organism Oryza sativa Co-expressed genes As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Click Gene/Probe ID. here to hide the above table. Specifically expressed experiments As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title 4.1 96.0 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings 3.7 95.6 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice 3.2 94.9 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice 3.1 94.8 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice 2.9 94.5 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice 2.9 94.5 GSM149412 Rice Bala 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate 2.8 94.3 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice 2.7 94.1 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma 2.7 94.1 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma 2.7 94.1 GSM302923 seedling_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling here to hide the above table. Homologous genes Paralogous genes Click Click Gene ID to show a list of homologous genes. here to hide the above table. Orthologous genes Click Gene ID to show a list of orthologous genes.
HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB 0.25 4e-54 212 Arabidopsis thaliana At5g46210 834663 CUL4 (CULLIN4) Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1. - - - C.G. S.X. Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report) 0.58 7e-66 252 Glycine max Gma.6307.1.S1_at CD406411 - - 4e-110 At5g46210 CUL4 (CULLIN4) C.G. S.X. Please select 0.76 0 1005 Hordeum vulgare Contig5473_at Contig5473 - - 6e-47 At5g46210 CUL4 (CULLIN4) C.G. S.X. Please select 0.52 1e-94 347 Populus trichocarpa Ptp.1438.1.S1_at CK093536 - - 4e-141 At5g46210 CUL4 (CULLIN4) C.G. S.X. Please selectath,ptr eFP Browser (expression) 0.60 0 975 Triticum aestivum Ta.14271.1.S1_at BQ838640 - - 3e-34 At5g46210 CUL4 (CULLIN4) C.G. S.X. Please select 0.08 4e-8 57 Vitis vinifera 1619768_at CB003377 - - 1e-7 At5g46210 CUL4 (CULLIN4) C.G. S.X. Please select 0.55 0 977 Zea mays Zm.5222.1.A1_a_at CA404656 hypothetical protein LOC100192843 - 1e-55 At5g46210 CUL4 (CULLIN4) C.G. S.X. Please select here to hide the above table. Biological processes Click GO ID to show a list of genes that are associated with the GO ID.
ECC GO ID Process Name L GO:0007049 The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. here to hide the above table. Metabolic pathways Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID. Click Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID. here to hide the above table. Back to the CoP portal site Back to the KAGIANA project homepage