CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0786800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0786800 AK059186.1 - The start codon is not identified. 4e-54 At5g46210 CUL4 (CULLIN4) S.X. H.G.
0.73 91.1 Os01g0585700 NM_192531.1 - SIT4 phosphatase-associated protein family protein 2e-17 At1g30470 SIT4 phosphatase-associated family protein S.X. H.G.
0.60 79.7 Os09g0281600 AK067020.1 - SWAP/Surp domain containing protein 6e-12 At3g52120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein S.X. H.G.
0.56 76.3 Os03g0750800 AK061386.1 - Transcriptional adaptor ADA2b (AT4g16420/dl4235c) 9e-11 At4g16420 ADA2B (HOMOLOG OF YEAST ADA2 2B) S.X. H.G.
0.47 62.3 Os11g0661400 AK063910.1 - AAA ATPase, central region domain containingprotein 9e-37 At1g02890 AAA-type ATPase family protein S.X. H.G.
0.38 46.9 Os07g0495900 AK060293.1 - Regulator of nonsense transcripts 1 homolog 1e-6 At5g47010 LBA1 (LOW-LEVEL BETA-AMYLASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 96.0 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.7 95.6 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.2 94.9 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
3.1 94.8 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
2.9 94.5 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
2.9 94.5 GSM149412 Rice Bala 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
2.8 94.3 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
2.7 94.1 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
2.7 94.1 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
2.7 94.1 GSM302923 seedling_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 Os04g0643000 AK069061.1 - Cullin family protein 1e-19 At1g26830 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) C.G. S.X.
0.01 1e+0 36 Os07g0173200 AK098899.1 - Conserved hypothetical protein 3e-1 At5g60840 unknown protein C.G. S.X.
0.01 4e+0 34 Os01g0857000 AK119434.1 - Double-stranded RNA binding domain containingprotein 6e-15 At5g01270 CPL2 C.G. S.X.
0.01 4e+0 34 Os05g0462500 AK064348.1 - Lung seven transmembrane receptor family protein 2e-4 At5g18520 - C.G. S.X.
0.01 4e+0 34 Os11g0103800 AK073546.1 - Hypothetical protein 1e+0 At3g26690 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 4e-54 212 Arabidopsis thaliana At5g46210 834663 CUL4 (CULLIN4) Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1. - - - C.G. S.X.
0.58 7e-66 252 Glycine max Gma.6307.1.S1_at CD406411 - - 4e-110 At5g46210 CUL4 (CULLIN4) C.G. S.X.
0.76 0 1005 Hordeum vulgare Contig5473_at Contig5473 - - 6e-47 At5g46210 CUL4 (CULLIN4) C.G. S.X.
0.52 1e-94 347 Populus trichocarpa Ptp.1438.1.S1_at CK093536 - - 4e-141 At5g46210 CUL4 (CULLIN4) C.G. S.X.
0.60 0 975 Triticum aestivum Ta.14271.1.S1_at BQ838640 - - 3e-34 At5g46210 CUL4 (CULLIN4) C.G. S.X.
0.08 4e-8 57 Vitis vinifera 1619768_at CB003377 - - 1e-7 At5g46210 CUL4 (CULLIN4) C.G. S.X.
0.55 0 977 Zea mays Zm.5222.1.A1_a_at CA404656 hypothetical protein LOC100192843 - 1e-55 At5g46210 CUL4 (CULLIN4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007049 The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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