CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0770000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.85 96.1 Os03g0770000 9631.m05471 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 1e+1 At5g23411 unknown protein S.X. H.G.
0.42 53.9 Os01g0272100 9629.m01650 - - 7e+0 At3g11260 WOX5 (WUSCHEL RELATED HOMEOBOX 5) S.X. H.G.
0.38 46.9 Os09g0519000 AK111425.1 - Conserved hypothetical protein 3e+0 At4g16750 DRE-binding transcription factor, putative S.X. H.G.
0.37 45.0 Os06g0703600 AK110999.1 - 26S proteasome non-ATPase regulatory subunit 14(26S proteasome regulatory subunit rpn11) 1e-2 At5g23540 26S proteasome regulatory subunit, putative S.X. H.G.
0.35 41.7 Os03g0312500 AK109328.1 - Inhibitor of apoptosis-like protein 1e+1 At5g61340 unknown protein S.X. H.G.
0.32 36.3 Os05g0583550 NM_191268.1 - - 7e-1 At1g47490 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) S.X. H.G.
0.32 36.3 Os11g0520201 9639.m02910 - - 8e-2 At2g35960 NHL12 S.X. H.G.
0.29 31.1 Os02g0328200 AK064617.1 - Conserved hypothetical protein 3e-5 At4g36170 unknown protein S.X. H.G.
0.28 31.1 Os06g0572766 9634.m03579 - - 7e+0 At5g17810 WOX12 (WUSCHEL related homeobox 12) S.X. H.G.
0.26 25.6 Os02g0216900 9630.m01136 - - 6e-1 At3g01910 SOX (SULFITE OXIDASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.6 99.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
42.5 99.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
40.4 99.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
33.6 99.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.7 99.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.5 99.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.8 99.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.4 99.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.4 99.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.8 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-14 79 Os07g0124300 9635.m00234 - - 3e-1 At5g53590 auxin-responsive family protein C.G. S.X.
0.10 9e-18 91 Os01g0542700 AK110526.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 3e-2 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
0.06 7e-6 52 Os05g0129300 AK065180.1 - Basic/leucine zipper protein 3e-3 At1g75390 AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44) C.G. S.X.
0.05 5e-10 65 Os08g0487100 AK107150.1 - BZIP transcription factor BZI-2 3e-3 At1g65090 unknown protein C.G. S.X.
0.04 2e-3 44 Os02g0132500 AK070887.1 - BZIP transcription factor 1e-8 At4g34588 CPuORF2 (Conserved peptide upstream open reading frame 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e+1 30 Arabidopsis thaliana At5g23411 6240916 unknown protein F:unknown;P:unknown;C:unknown - - - C.G. S.X.
0.04 3e-1 36 Glycine max GmaAffx.80271.1.S1_at AW156732 - - 2e-1 At5g53110 - C.G. S.X.
0.06 3e-11 67 Hordeum vulgare Contig4462_at Contig4462 - - 3e-3 At2g18162 CPuORF1 (Conserved peptide upstream open reading frame 1) C.G. S.X.
0.04 2e-2 40 Populus trichocarpa PtpAffx.102156.2.A1_a_at CV244460 - - 1e-1 At5g07520 GRP18 (GLYCINE-RICH PROTEIN 18) C.G. S.X.
0.10 2e-17 89 Triticum aestivum TaAffx.57869.1.S1_s_at CA624383 - - 1e+0 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1617922_at CF405309 hypothetical protein LOC100241150 - 4e+0 At4g09960 STK (SEEDSTICK) C.G. S.X.
0.06 7e-18 89 Zea mays Zm.367.1.S1_at D26563.1 low temperature-induced protein15 - 2e-4 At1g75388 CPuORF5 (Conserved peptide upstream open reading frame 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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