CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0764100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os03g0764100 AF332876.1 - Conserved hypothetical protein 6e-1 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) S.X. H.G.
0.80 94.6 Os03g0189100 AK066877.1 - Conserved hypothetical protein 2e+0 At5g02150 binding S.X. H.G.
0.77 93.1 Os05g0343400 AK121190.1 - WRKY transcription factor 53 (Transcription factorWRKY12) 3e-7 At5g07100 WRKY26 S.X. H.G.
0.73 91.1 Os05g0128200 AK099898.1 - Transposable element Mu1 sequence 3e-6 At5g07500 PEI1 S.X. H.G.
0.60 79.7 Os01g0570800 AK099914.1 - IQ calmodulin-binding region domain containingprotein 8e-14 At4g33050 EDA39 (embryo sac development arrest 39) S.X. H.G.
0.57 77.0 Os01g0934100 AK100995.1 - C2 domain containing protein 7e-1 At5g62720 integral membrane HPP family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.3 97.9 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
8.5 97.7 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
6.9 97.3 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.9 97.3 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
6.1 97.1 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.0 97.0 GSM431933 Shoot- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.6 96.9 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
5.4 96.8 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
5.3 96.7 GSM431934 Shoot- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.3 96.7 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 9e-11 69 Os12g0583700 AY219847.1 - Zn-finger, C2H2 type domain containing protein 6e-4 At5g04340 ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6) C.G. S.X.
0.11 1e-12 75 Os03g0610400 AY305868.1 - Zn-finger, C2H2 type domain containing protein 2e-3 At5g43170 AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3) C.G. S.X.
0.04 6e-12 73 Os08g0503000 CB967452 - Conserved hypothetical protein 4e-4 At5g27720 emb1644 (embryo defective 1644) C.G. S.X.
0.03 6e-12 73 Os11g0302700 AK073931.1 - RecA bacterial DNA recombination protein familyprotein 4e-6 At2g19490 recA family protein C.G. S.X.
0.01 1e-12 75 Os06g0340200 AK069001.1 - Conserved hypothetical protein 2e-1 At3g10030 aspartate/glutamate/uridylate kinase family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Arabidopsis thaliana At2g44840 819093 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. - - - C.G. S.X.
0.04 4e-3 44 Glycine max Gma.235.2.S1_a_at AW706014 scof-1 protein - 3e-5 At3g49930 zinc finger (C2H2 type) family protein C.G. S.X.
0.26 8e-76 284 Hordeum vulgare Contig18088_at Contig18088 - - 6e+0 At5g04760 myb family transcription factor C.G. S.X.
0.04 2e-1 38 Populus trichocarpa PtpAffx.202434.1.S1_at pmrna4878 hypothetical protein - 1e-2 At5g24500 unknown protein C.G. S.X.
0.44 3e-95 349 Triticum aestivum Ta.103.1.S1_at D16416.1 zinc-finger protein WZF1 - 6e-1 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1620003_at BQ796570 hypothetical protein LOC100251303 - 9e-5 At2g18800 XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21) C.G. S.X.
0.35 5e-52 204 Zea mays Zm.2807.1.A1_at BM334793 zinc-finger protein 1 - 7e-1 At5g57345 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage