CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0758800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 77.0 Os03g0758800 AK060387.1 - Eukaryotic translation initiation factor 5A-2(eIF-5A) (eIF-4D) 7e-31 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) S.X. H.G.
0.80 94.6 Os05g0445500 AK121459.1 - 60S acidic ribosomal protein P2B 4e-10 At2g27720 60S acidic ribosomal protein P2 (RPP2A) S.X. H.G.
0.77 93.1 Os12g0567700 AK070647.1 - - 5e-75 At2g18020 EMB2296 (embryo defective 2296) S.X. H.G.
0.75 91.9 Os02g0519900 AK100313.1 - Elongation factor EF-2 (Fragment) 0 At1g56070 LOS1 S.X. H.G.
0.67 87.2 Os03g0177400 AK103738.1 - EF-1 alpha 0 At1g07920 elongation factor 1-alpha / EF-1-alpha S.X. H.G.
0.65 83.8 Os02g0717800 AK105284.1 - Ribosomal protein L31e domain containing protein 3e-10 At5g56710 60S ribosomal protein L31 (RPL31C) S.X. H.G.
0.64 83.4 Os03g0234200 D12629.1 - Ubiquitin fused to ribosomal protein L40 3e-45 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) S.X. H.G.
0.61 81.2 Os03g0345200 D12633.1 - 40S ribosomal protein S21 3e-10 At5g27700 structural constituent of ribosome S.X. H.G.
0.61 81.2 Os03g0177500 D63583.1 - EF-1 alpha 0 At1g07920 elongation factor 1-alpha / EF-1-alpha S.X. H.G.
0.55 73.7 Os01g0328400 AK061988.1 - Ubiquitin 7e-66 At2g47110 UBQ6 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.8 95.7 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
3.2 94.9 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
2.9 94.5 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
2.8 94.3 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
2.8 94.3 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
2.6 93.8 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
2.5 93.6 GSM67057 FL478 salt stressed replicate 3 GSE3053 Rice salt expression
2.5 93.6 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
2.4 93.3 GSM67061 IR29 salt stressed replicate 2 GSE3053 Rice salt expression
2.4 93.3 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 3e-105 383 Os12g0507200 AK099039.1 - Eukaryotic translation initiation factor 5A-2(eIF-5A) (eIF-4D) 9e-49 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) C.G. S.X.
0.38 1e-95 351 Os07g0112800 AK058206.1 - Eukaryotic translation initiation factor 5A-4(eIF-5A 4) 7e-37 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) C.G. S.X.
0.38 6e-76 286 Os07g0597000 D21286.1 - Eukaryotic translation initiation factor 5A(eIF-5A) 2e-1 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) C.G. S.X.
0.02 9e-1 36 Os01g0626500 AK067735.1 - Hypothetical protein 5e+0 At5g09740 HAM2 (histone acetyltransferase of the MYST family 2) C.G. S.X.
0.01 6e-2 40 Os07g0507300 AK106514.1 - GCK-like kinase MIK 4e-28 At3g15220 protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 7e-31 135 Arabidopsis thaliana At1g69410 843273 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. - - - C.G. S.X.
0.51 6e-66 252 Glycine max Gma.6129.2.S1_s_at AW186006 - - 1e-34 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) C.G. S.X.
0.43 9e-72 270 Hordeum vulgare Contig2581_at Contig2581 - - 2e-68 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) C.G. S.X.
0.43 4e-79 295 Populus trichocarpa PtpAffx.249.122.S1_at CV276086 hypothetical protein - 1e-41 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) C.G. S.X.
0.49 6e-56 218 Triticum aestivum Ta.1305.2.S1_x_at BJ291943 - - 9e-60 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) C.G. S.X.
0.41 3e-58 224 Vitis vinifera 1607236_at CF206372.1 - - 2e-46 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) C.G. S.X.
0.41 4e-89 327 Zea mays Zm.1314.1.A1_at AY103556.1 translation initiation factor 5A - 5e-29 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006413 The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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