CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0752800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os03g0752800 AY332478.1 - Transcription factor, MADS-box domain containingprotein 2e-16 At5g60910 AGL8 (agamous-like 8) S.X. H.G.
0.80 94.6 Os07g0108900 AF058698.1 - MADS15 protein 8e-16 At5g60910 AGL8 (agamous-like 8) S.X. H.G.
0.61 81.2 Os02g0682200 U78782.1 - MADS box protein 2e-4 At3g61120 AGL13 (AGAMOUS-LIKE 13) S.X. H.G.
0.57 77.0 Os03g0215400 L34271.1 - Box protein (MADS box protein MADS1) 4e-2 At5g60910 AGL8 (agamous-like 8) S.X. H.G.
0.50 68.0 Os04g0580700 AY551918.1 - MADS box transcription factor MADS17 4e-5 At2g45650 AGL6 (AGAMOUS-LIKE 6) S.X. H.G.
0.43 55.4 Os06g0162800 U78890.1 - MADS box protein 6e-4 At1g24260 SEP3 (SEPALLATA3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.8 99.1 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
17.0 98.8 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
14.0 98.5 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
13.4 98.5 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
13.3 98.4 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
13.1 98.4 GSM429985 Rice mutant phoenix (pho) panicle rep 2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
12.2 98.3 GSM154957 Leaf_control_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
12.1 98.3 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.5 98.2 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.1 98.2 GSM154958 Leaf_control_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 1e-117 424 Os07g0108900 AF058698.1 - MADS15 protein 8e-16 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.12 6e-49 196 Os07g0605200 AF091458.1 - MADS-box protein EAP2S 2e-3 At3g57390 AGL18 C.G. S.X.
0.10 2e-39 165 Os09g0507200 U78892.1 - MADS box protein 1e-20 At3g02310 SEP2 (SEPALLATA 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 2e-16 87 Arabidopsis thaliana At5g60910 836212 AGL8 (agamous-like 8) MADS box gene negatively regulated by APETALA1 - - - C.G. S.X.
0.12 4e-6 54 Glycine max GmaAffx.57956.1.S1_at BQ454007 - - 1e-33 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.36 9e-116 416 Hordeum vulgare Contig11229_at Contig11229 - - 2e-4 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.07 3e-1 38 Populus trichocarpa PtpAffx.86916.1.A1_at CV246639 - - 6e-41 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.44 2e-167 589 Triticum aestivum TaAffx.143995.17.S1_s_at AY188331 MADS-box protein TaVRT-1 - 1e-3 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.13 2e-13 75 Vitis vinifera 1621420_at AY275713.1 FUL-like protein - 5e-38 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.39 4e-176 617 Zea mays Zm.14828.1.S1_at AJ430632.1 m15 protein - 8e-10 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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