Gene omics information

Query gene ID	Os03g0747200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	68.0	Os03g0747200	AK102631.1	-	Conserved hypothetical protein	6e-2	At1g20050	HYD1 (HYDRA1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os08g0504600	AK064868.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e-6	At3g12640	RNA binding / nucleic acid binding / nucleotide binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os04g0465000	AK060688.1	-	Sterile alpha motif SAM domain containing protein	3e+0	At3g48209	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os06g0485100	AK068560.1	-	Conserved hypothetical protein	2e-6	At3g18380	sequence-specific DNA binding / transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os07g0103200	AU166434	-	Conserved hypothetical protein	8e-10	At4g27120	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	22.4	Os10g0409900	AK068671.1	-	Cyclin-like F-box domain containing protein	6e-24	At1g55270	kelch repeat-containing F-box family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	Os04g0643000	AK069061.1	-	Cullin family protein	1e-19	At1g26830	ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	96.9	GSM302916	endo6D_rep1	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
3.9	95.8	GSM195229	Endosperm	GSE7951	Genome-wide gene expression profiling of rice stigma
3.4	95.2	GSM240997	gif1 7 DAF, biological replicate 1	GSE9498	Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
3.4	95.2	GSM240999	gif1 7 DAF, biological replicate 3	GSE9498	Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
3.2	94.9	GSM159211	Seed (S2, 3 - 4 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
3.1	94.8	GSM195230	5d-seed	GSE7951	Genome-wide gene expression profiling of rice stigma
3.0	94.6	GSM357133	14-day-old seedling, rep 2	GSE14275	Expression data for heat shock in rice seedlings
3.0	94.6	GSM159215	Seed (S3, 5 - 10 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
3.0	94.6	GSM302917	endo6D_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
2.9	94.5	GSM159214	Seed (S3, 5 - 10 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	36	Os02g0664300	AK103515.1	-	Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein	1e-20	At4g20850	TPP2 (TRIPEPTIDYL PEPTIDASE II)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e+0	36	Os11g0684100	AK121102.1	-	-	6e-1	At5g67190	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e+0	34	Os03g0593200	9631.m03811	-	Protein of unknown function DUF21 domaincontaining protein	4e-46	At1g55930	CBS domain-containing protein / transporter associated domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e+0	34	Os05g0506300	AK061071.1	-	Conserved hypothetical protein	4e-2	At4g25620	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-2	40	Arabidopsis thaliana	At1g20050	838593	HYD1 (HYDRA1)	C-8 sterol isomerase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	Gma.13163.2.S1_a_at	BQ273044	-	-	4e+0	At2g19300	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Hordeum vulgare	Contig11092_at	Contig11092	-	-	5e+0	At5g59030	COPT1 (copper transporter 1)	C.G.	S.X.	Please select
0.02	2e-2	42	Populus trichocarpa	PtpAffx.209860.1.S1_at	pmrna19434	hypothetical protein	-	1e-1	At1g73165	CLE1 (CLAVATA3/ESR-RELATED 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	3e-1	38	Triticum aestivum	TaAffx.51156.1.S1_at	CA730217	-	-	4e+0	At1g28305	-	C.G.	S.X.	Please select
0.01	3e-1	36	Vitis vinifera	1620215_at	BM437406	-	-	1e-1	At5g66830	F-box family protein	C.G.	S.X.	Please select
0.09	1e-7	57	Zea mays	Zm.17546.1.A1_at	CK347220	-	-	2e+0	At4g16350	CBL6 (CALCINEURIN B-LIKE PROTEIN 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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