Gene omics information

Query gene ID	Os03g0740600
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	91.9	Os03g0740600	AK101589.1	-	Deoxyhypusine synthase (EC 2.5.1.46)	1e-15	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os03g0685600	AK111863.1	-	WD40-like domain containing protein	3e-3	At1g71840	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os02g0762300	AK106684.1	-	PP-loop family protein	9e-47	At2g44270	ATP binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os01g0966300	AK073175.1	-	Mitochondrial processing peptidase	2e-4	At1g51980	mitochondrial processing peptidase alpha subunit, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os04g0482700	AK111072.1	-	Conserved hypothetical protein	2e+0	At4g16710	glycosyltransferase family protein 28	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os04g0630000	AK060199.1	-	SDA1 domain containing protein	7e-8	At4g31520	SDA1 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	Os05g0277300	AK058300.1	-	Peptide chain release factor 1	4e-27	At2g47020	peptide chain release factor, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.3	98.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7	98.6	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6	97.9	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	38	Os04g0634800	AK107772.1	-	-	1e+0	At5g44450	methyltransferase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e+0	36	Os06g0528900	9634.m03167	-	-	1e+1	At5g44572	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-1	38	Os02g0102800	AK070607.1	-	Pleckstrin-like domain containing protein	1e-34	At5g45560	pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-1	38	Os07g0471100	AK103840.1	-	Nuclear protein SET domain containing protein	2e-1	At2g35430	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-1	38	Os12g0633400	AK100940.1	-	Pathogenesis-related protein PR-1 precursor	8e-1	At2g36030	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e+0	36	Os03g0792800	9631.m05684	-	Beta-1,3-glucanase-like protein	5e-3	At5g58090	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	1e-15	85	Arabidopsis thaliana	At5g05920	830477	DHS (DEOXYHYPUSINE SYNTHASE)	Encodes a deoxyhypusine synthase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	2e-18	95	Glycine max	Gma.5453.1.S1_at	CD409016	-	-	5e-51	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	C.G.	S.X.	Please select
0.29	6e-108	391	Hordeum vulgare	rbags19i06_at	rbags19i06	-	-	2e-17	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	C.G.	S.X.	Please select
0.20	3e-26	121	Populus trichocarpa	PtpAffx.79508.1.S1_at	DN492236	hypothetical protein	-	4e-89	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	6e-2	40	Triticum aestivum	TaAffx.119257.1.S1_at	CA693825	-	-	3e-1	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	C.G.	S.X.	Please select
0.05	5e-12	71	Vitis vinifera	1622796_at	CF208469	hypothetical protein LOC100247561	-	2e-5	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	C.G.	S.X.	Please select
0.47	3e-103	375	Zea mays	Zm.12010.1.A1_at	BM382625	hypothetical protein LOC100191910	-	3e-3	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0008612	The posttranslational modification of peptidyl-lysine to form hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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