CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0738600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 63.7 Os03g0738600 AK073529.1 - Lipoxygenase L-2 (EC 1.13.11.12) 2e+0 At1g55020 LOX1 S.X. H.G.
0.67 87.2 Os03g0836800 AK061197.1 - Peptidase M20 family protein 9e+0 At5g38900 DSBA oxidoreductase family protein S.X. H.G.
0.60 79.7 Os12g0548700 AK058739.1 - CI2C 1e+0 At4g14805 protease inhibitor/seed storage/lipid transfer protein (LTP)-related S.X. H.G.
0.44 58.1 Os05g0153300 9633.m00532 - Lipase, class 3 family protein 3e+0 At2g20740 - S.X. H.G.
0.15 10.3 Os04g0228400 Y07782.1 - Expansin S2 4e-14 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) S.X. H.G.
0.04 2.0 Os08g0550200 AK070238.1 - Multi antimicrobial extrusion protein MatE familyprotein 4e-3 At1g23300 MATE efflux family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
109.8 100.0 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
57.2 99.9 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
14.2 98.5 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
13.1 98.4 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
13.0 98.4 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
11.1 98.2 GSM159196 Inflorescence (P3, 5 - 10 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
9.4 97.9 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.8 97.6 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
6.9 97.3 GSM429985 Rice mutant phoenix (pho) panicle rep 2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
6.6 97.3 GSM159195 Inflorescence (P3, 5 - 10 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 3e-28 129 Os03g0699700 AB099850.1 - Lipoxygenase (EC 1.13.11.12) (Fragment) 2e-2 At1g55020 LOX1 C.G. S.X.
0.33 2e-106 389 Os03g0700700 AK072689.1 - Lipoxygenase (EC 1.13.11.12) 3e-5 At3g22400 LOX5 C.G. S.X.
0.24 8e-44 180 Os11g0575600 AK073570.1 - Lipoxygenase L-2 1e-1 At3g22400 LOX5 C.G. S.X.
0.10 3e-12 75 Os02g0194700 AK071915.1 - Plant lipoxygenase family protein 4e-1 At5g66010 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.08 1e-30 137 Os11g0704200 9639.m04471 - - 8e-1 At5g58005 unknown protein C.G. S.X.
0.07 2e-19 99 Os06g0135460 9634.m00355 - - 1e+1 At3g29639 - C.G. S.X.
0.06 4e-21 105 Os02g0300900 9630.m01890 - - 4e-1 At3g03020 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Arabidopsis thaliana At1g55020 841944 LOX1 lipoxygenase, a defense gene conferring resistance Xanthomonas campestris - - - C.G. S.X.
0.02 2e-3 46 Glycine max GmaAffx.70690.1.S1_at AI736267 - - 3e-6 At1g72520 lipoxygenase, putative C.G. S.X.
0.65 0 664 Hordeum vulgare Contig1736_at Contig1736 lipoxygenase 1 protein - 1e+0 At3g22400 LOX5 C.G. S.X.
0.02 5e-1 38 Populus trichocarpa Ptp.6239.1.S1_at DN490661 hypothetical protein - 4e-8 At1g55020 LOX1 C.G. S.X.
0.47 3e-113 410 Triticum aestivum Ta.28171.1.S1_at BT008992.1 - - 4e+0 At3g22400 LOX5 C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1612117_at CF212666 hypothetical protein LOC100258476 - 2e-33 At1g01650 aspartic-type endopeptidase/ peptidase C.G. S.X.
0.70 0 1009 Zea mays Zm.445.1.S1_at AF329371.1 Lipoxygenase - 6e-3 At3g22400 LOX5 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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