CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0728200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 53.9 Os03g0728200 CA762474 - Protein prenyltransferase domain containingprotein 1e+0 At5g36228 nucleic acid binding / zinc ion binding S.X. H.G.
0.83 95.8 Os07g0634300 AK109879.1 - Conserved hypothetical protein 5e-2 At5g46780 VQ motif-containing protein S.X. H.G.
0.67 87.2 Os04g0672700 AK102863.1 - Protein prenyltransferase domain containingprotein 2e+0 At5g64130 - S.X. H.G.
0.56 76.3 Os06g0690900 9634.m04635 - Protein prenyltransferase domain containingprotein 4e-1 At3g16710 - S.X. H.G.
0.53 71.3 Os11g0486000 AK106715.1 - - 1e+0 At5g53590 auxin-responsive family protein S.X. H.G.
0.43 55.4 Os10g0572000 NM_197842.1 - GTP-binding protein, HSR1-related domaincontaining protein 6e-1 At5g64460 - S.X. H.G.
0.39 48.3 Os01g0937300 AK062872.1 - Disease resistance protein family protein 2e+0 At4g12530 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.0 99.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.8 99.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.1 99.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.5 99.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.2 99.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.9 99.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.7 99.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.8 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.5 99.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.1 99.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 6e-56 220 Os04g0283100 9632.m01973 - - 9e-1 At5g40490 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.04 5e-13 77 Os02g0772100 AK064111.1 - Conserved hypothetical protein 3e-3 At1g23710 unknown protein C.G. S.X.
0.03 5e-10 67 Os02g0828200 AK071199.1 - TPR-like domain containing protein 2e-1 At3g19990 unknown protein C.G. S.X.
0.03 5e-10 67 Os02g0828300 AK108744.1 - Conserved hypothetical protein 1e-1 At5g46730 glycine-rich protein C.G. S.X.
0.03 5e-10 67 Os02g0828400 AK107588.1 - - 2e-1 At5g46730 glycine-rich protein C.G. S.X.
0.02 1e-1 38 Os03g0811900 AK122007.1 - NTGB1 (Fragment) 4e-101 At1g23490 ATARF1 (ADP-RIBOSYLATION FACTOR 1) C.G. S.X.
0.01 5e-1 36 Os01g0104800 NM_183472.1 - Sas10/Utp3 family protein 2e-1 At1g33660 peroxidase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At5g36228 3771323 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.51208.1.S1_at BM891039 - - 8e-1 At1g72580 unknown protein C.G. S.X.
0.04 3e-2 38 Hordeum vulgare HVSMEm0015H16f_s_at HVSMEm0015H16f - - 2e-19 At1g23490 ATARF1 (ADP-RIBOSYLATION FACTOR 1) C.G. S.X.
0.06 4e-1 36 Populus trichocarpa PtpAffx.249.742.S1_at CV258574 - - 2e+0 At5g07840 ankyrin repeat family protein C.G. S.X.
0.03 4e+0 32 Triticum aestivum TaAffx.85529.1.S1_at CA617868 - - 4e+0 At2g35270 DNA-binding protein-related C.G. S.X.
0.04 8e-2 36 Vitis vinifera 1618969_at CD798426 hypothetical protein LOC100262654 - 2e-3 At2g42700 - C.G. S.X.
0.04 7e+0 30 Zea mays ZmAffx.238.1.A1_at AI670250 - - 1e+1 At3g62140 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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