CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0718600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 96.4 Os03g0718600 AK106450.1 - Cytochrome c oxidase assembly protein CtaG/Cox11family protein 5e-45 At1g02410 cytochrome c oxidase assembly protein CtaG / Cox11 family S.X. H.G.
0.46 60.9 Os10g0479600 AK063255.1 - Protein of unknown function UPF0108 family protein 4e-4 At3g59280 TXR1 (THAXTOMIN A RESISTANT 1) S.X. H.G.
0.44 58.1 Os04g0438500 AK068396.1 - Conserved hypothetical protein 1e-5 At1g21370 unknown protein S.X. H.G.
0.33 38.8 Os07g0476500 AK066346.1 - Peptidyl-prolyl cis-trans isomerase, cyclophilintype domain containing protein 1e-5 At3g66654 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein S.X. H.G.
0.24 22.4 Os03g0742400 AK060249.1 - MRS2-7 6e-26 At5g64560 magnesium transporter CorA-like family protein (MRS2-2) S.X. H.G.
0.23 21.2 Os09g0372800 AK112000.1 - Protein kinase domain containing protein 3e-9 At5g08160 ATPK3 S.X. H.G.
0.20 16.5 Os07g0647800 AK111992.1 - Conserved hypothetical protein 2e-7 At1g63900 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 96.7 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
4.4 96.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.9 95.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.6 95.5 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
3.4 95.2 GSM278850 KT95-418-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
3.4 95.2 GSM173094 Rice OsSRT1 RNAi transgenic line LM3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.3 95.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.3 95.1 GSM154950 Leaf_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
3.3 95.1 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
3.3 95.1 GSM278851 KT95-418-RSV infected,biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 6e-114 412 Os10g0440500 AY224486.1 - Heavy metal transport/detoxification proteindomain containing protein 1e-2 At2g39320 OTU-like cysteine protease family protein C.G. S.X.
0.07 1e-7 59 Os03g0152000 AK102357.1 - - 4e-2 At5g24580 copper-binding family protein C.G. S.X.
0.03 1e-16 89 Os10g0412800 AK070592.1 - Hypothetical protein 9e-5 At1g02410 cytochrome c oxidase assembly protein CtaG / Cox11 family C.G. S.X.
0.02 2e-6 56 Os02g0241600 AK111618.1 - Protein kinase domain containing protein 5e-19 At2g31010 protein kinase family protein C.G. S.X.
0.01 2e-6 56 Os04g0461800 AK106770.1 - Actin-binding FH2 domain containing protein 3e-1 At1g62240 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 5e-45 182 Arabidopsis thaliana At1g02410 839364 cytochrome c oxidase assembly protein CtaG / Cox11 family F:copper ion binding;P:biological_process unknown;C:unknown;OBFMP - - - C.G. S.X.
0.16 3e-22 107 Glycine max GmaAffx.39018.1.S1_at BE822005 - - 9e-42 At1g02410 cytochrome c oxidase assembly protein CtaG / Cox11 family C.G. S.X.
0.27 5e-105 381 Hordeum vulgare HW03O03u_at HW03O03u - - 2e-32 At1g02410 cytochrome c oxidase assembly protein CtaG / Cox11 family C.G. S.X.
0.15 1e-40 169 Populus trichocarpa PtpAffx.45958.1.A1_at DN492279 hypothetical protein - 7e-55 At1g02410 cytochrome c oxidase assembly protein CtaG / Cox11 family C.G. S.X.
0.41 2e-177 623 Triticum aestivum Ta.6887.1.S1_at CK197378 - - 1e-41 At1g02410 cytochrome c oxidase assembly protein CtaG / Cox11 family C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1619295_at CA809176 hypothetical protein LOC100264617 - 7e-6 At5g14910 heavy-metal-associated domain-containing protein C.G. S.X.
0.41 7e-172 603 Zea mays Zm.18389.1.S1_at CF625987 - - 8e-34 At1g02410 cytochrome c oxidase assembly protein CtaG / Cox11 family C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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