CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0706900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 88.4 Os03g0706900 AK065293.1 - Zn-finger, RING domain containing protein 2e-14 At1g73950 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.58 77.0 Os06g0714200 BM419528 - Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein 8e-19 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative S.X. H.G.
0.56 76.3 Os04g0525900 AK065806.1 - Major facilitator superfamily protein 1e-18 At5g64500 membrane protein-related S.X. H.G.
0.55 73.7 Os04g0517400 AK059571.1 - Conserved hypothetical protein 5e-15 At5g18480 PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6) S.X. H.G.
0.55 73.7 Os06g0188000 AK066305.1 - Cyclic nucleotide-gated channel C (Fragment) 1e-11 At4g30360 ATCNGC17 S.X. H.G.
0.51 68.7 Os02g0822400 AK062258.1 - No apical meristem (NAM) protein domain containingprotein 5e-3 At5g09330 anac082 (Arabidopsis NAC domain containing protein 82) S.X. H.G.
0.49 64.4 Os02g0581300 AK071553.1 - ASC1 (Alternaria stem canker resistance protein) 5e-8 At3g25540 LAG1 S.X. H.G.
0.48 63.7 Os09g0281700 X59276.1 - Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1) 1e-17 At5g47960 ATRABA4C S.X. H.G.
0.44 58.1 Os01g0780500 AF225922.1 - SCAMP family protein 1e-14 At2g20840 secretory carrier membrane protein (SCAMP) family protein S.X. H.G.
0.41 52.4 Os06g0116100 CB683800 - Serine/threonine-protein kinase MAK (EC 2.7.1.37)(Male germ cell- associated kinase) 9e-17 At5g45430 protein kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.3 97.7 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
7.9 97.6 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
7.8 97.6 GSM154937 Root_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
7.6 97.5 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
7.2 97.4 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
5.6 96.9 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
5.4 96.8 GSM173080 Rice MH63 Control2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.0 96.6 GSM173089 Rice MH63 Control3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
4.7 96.4 GSM173086 Rice MH63 Control1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
4.4 96.2 GSM173093 Rice OsSRT1 RNAi transgenic line LM2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 40 Os11g0438000 AK073048.1 - Conserved hypothetical protein 2e+0 At5g19090 heavy-metal-associated domain-containing protein C.G. S.X.
0.01 3e-2 42 Os03g0435200 AK120095.1 - TPR-like domain containing protein 2e-3 At4g39952 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 1e-1 40 Os05g0352700 CA759249 - Zn-finger, RING domain containing protein 7e+0 At5g14930 SAG101 (SENESCENCE-ASSOCIATED GENE 101) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-14 81 Arabidopsis thaliana At1g73950 843732 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:vacuole;MPOVF - - - C.G. S.X.
0.13 2e-27 125 Glycine max GmaAffx.4382.3.S1_at CA784372 - - 9e-18 At1g18470 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.70 0 1574 Hordeum vulgare Contig7543_at Contig7543 - - 3e-22 At1g68820 membrane protein, putative C.G. S.X.
0.16 7e-15 83 Populus trichocarpa PtpAffx.124368.1.S1_at CN517633 hypothetical protein - 9e-21 At1g18470 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.52 0 910 Triticum aestivum Ta.23181.1.S1_at CK153402 - - 2e-4 At1g73950 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 5e+0 32 Vitis vinifera 1621469_at AY427115.1 - - 3e-2 At3g50950 disease resistance protein (CC-NBS-LRR class), putative C.G. S.X.
0.20 6e-68 258 Zea mays Zm.6521.1.A1_at AW067094 protein binding protein - 7e-5 At1g68820 membrane protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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