CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0704000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.95 99.6 Os03g0704000 CR281175 - 30S ribosomal protein S13, chloroplast precursor(CS13) 1e-1 At5g14320 30S ribosomal protein S13, chloroplast (CS13) S.X. H.G.
0.95 99.6 Os03g0284400 AF095709.1 - Ribosomal protein L10-like 2e+0 At5g43150 unknown protein S.X. H.G.
0.93 99.2 Os02g0137200 AK060290.1 - 50S ribosomal protein L3-1, chloroplast precursor 2e-6 At2g43030 ribosomal protein L3 family protein S.X. H.G.
0.93 99.2 Os03g0452300 AK065820.1 - 30S ribosomal protein S5 2e-4 At2g33800 ribosomal protein S5 family protein S.X. H.G.
0.91 98.9 Os03g0828100 AK059132.1 - 50S ribosomal protein L18 1e-13 At1g48350 ribosomal protein L18 family protein S.X. H.G.
0.91 98.9 Os03g0356300 AK061469.1 - Ribosomal protein L6 family protein 4e-17 At1g05190 emb2394 (embryo defective 2394) S.X. H.G.
0.89 96.9 Os03g0219900 AK066527.1 - 50S ribosomal protein L15, chloroplast precursor(CL15) (Fragment) 5e-1 At3g25920 RPL15 S.X. H.G.
0.87 96.6 Os02g0754300 AK068621.1 - - 9e-1 At4g10465 metal ion binding S.X. H.G.
0.87 96.6 Os03g0122200 AB042934.1 - 50S ribosomal protein L11 3e-2 At1g32990 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) S.X. H.G.
0.86 96.4 Os01g0662300 AF010581.1 - Chloroplast 50S ribosomal protein L12 1e+0 At5g65140 trehalose-6-phosphate phosphatase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 97.2 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.0 97.0 GSM431936 Shoot- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.8 97.0 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.7 96.9 GSM431935 Shoot- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.5 96.8 GSM421667 XOC, 2 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.7 96.4 GSM421718 MOCK, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.0 95.9 GSM421675 XOC, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.0 95.9 GSM421670 XOC, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.0 95.9 GSM421701 XOO, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.9 95.8 GSM421711 MOCK, 4 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 38 Os03g0185100 9631.m00814 - - 2e-2 At4g08230 glycine-rich protein C.G. S.X.
0.02 5e-2 40 Os09g0352400 AK061996.1 - Bystin family protein 6e-2 At3g54920 PMR6 (powdery mildew resistant 6) C.G. S.X.
0.02 8e-1 36 Os02g0589400 9630.m03609 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At5g47080 CKB1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-1 38 Arabidopsis thaliana At5g14320 831282 30S ribosomal protein S13, chloroplast (CS13) F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:small ribosomal subunit, chloroplast, chloroplast envelope;BOPMFA - - - C.G. S.X.
0.07 2e-7 57 Glycine max Gma.10122.1.A1_at CD405211 - - 3e-8 At5g14320 30S ribosomal protein S13, chloroplast (CS13) C.G. S.X.
0.52 2e-134 478 Hordeum vulgare Contig5526_s_at Contig5526 - - 2e+0 At5g14320 30S ribosomal protein S13, chloroplast (CS13) C.G. S.X.
0.04 4e-2 40 Populus trichocarpa PtpAffx.203818.1.S1_x_at pmrna7547 hypothetical protein - 3e-2 At1g12520 ATCCS (COPPER CHAPERONE FOR SOD1) C.G. S.X.
0.48 4e-137 488 Triticum aestivum Ta.9666.1.S1_x_at CK153436 - - 5e-1 At5g14320 30S ribosomal protein S13, chloroplast (CS13) C.G. S.X.
0.06 1e-1 36 Vitis vinifera 1606900_at CA816931 hypothetical protein LOC100254016 - 4e-16 At5g14320 30S ribosomal protein S13, chloroplast (CS13) C.G. S.X.
0.53 1e-147 521 Zea mays Zm.8875.1.S1_at CF055809 30S ribosomal protein S13 - 5e-1 At5g14320 30S ribosomal protein S13, chloroplast (CS13) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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