CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0684000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os03g0684000 AK105025.2 - Zn-finger, GATA type domain containing protein 1e-2 At3g21175 ZML1 (ZIM-LIKE 1) S.X. H.G.
0.50 68.0 Os02g0829600 AK069290.1 - Conserved hypothetical protein 1e-4 At3g19895 unknown protein S.X. H.G.
0.40 51.1 Os12g0103000 AK068622.1 - Mitochondrial substrate carrier family protein 3e-16 At2g35800 mitochondrial substrate carrier family protein S.X. H.G.
0.40 51.1 Os01g0392100 AK107724.1 - Conserved hypothetical protein 3e-2 At3g12820 AtMYB10 (myb domain protein 10) S.X. H.G.
0.31 34.5 Os07g0673700 AK071934.1 - Cyclin-like F-box domain containing protein 4e+0 At3g43583 unknown protein S.X. H.G.
0.22 19.4 Os06g0650800 AK071905.1 - MRS2-5 1e-33 At1g16010 magnesium transporter CorA-like family protein (MRS2-1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.4 97.5 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.0 97.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.3 96.7 GSM278845 WuYun3-RSV infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.2 96.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-7 59 Os10g0400200 AK107314.1 - Glutelin II precursor [Oryza sativa (japonicacultivar-group)] 2e-1 At1g18290 unknown protein C.G. S.X.
0.06 6e-6 54 Os02g0148500 AK068931.1 - Zn-finger, GATA type domain containing protein 1e-14 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.03 4e-7 57 Os01g0838600 AY266289.1 - The start codon is not identified. 2e+0 At3g01790 ribosomal protein L13 family protein C.G. S.X.
0.02 1e-4 50 Os02g0603500 NM_186455.1 - - 3e-3 At1g31070 UDP-N-acetylglucosamine pyrophosphorylase-related C.G. S.X.
0.02 1e-4 50 Os07g0165300 9635.m00651 - - 2e-3 At1g31070 UDP-N-acetylglucosamine pyrophosphorylase-related C.G. S.X.
0.01 1e-4 50 Os02g0772000 9630.m05261 - Ribosomal protein L24/L26 family protein 4e-10 At4g08350 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-2 42 Arabidopsis thaliana At3g21175 821670 ZML1 (ZIM-LIKE 1) member of a novel family of plant-specific GATA-type transcription factors. - - - C.G. S.X.
0.04 3e-4 48 Glycine max Gma.3859.1.S1_at BI470430 - - 6e-2 At1g51600 TIFY2A C.G. S.X.
0.10 2e-5 50 Hordeum vulgare Contig20936_at Contig20936 - - 3e-5 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.08 7e-5 50 Populus trichocarpa PtpAffx.207012.1.S1_at pmrna13889 hypothetical protein - 4e-7 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.43 6e-122 438 Triticum aestivum TaAffx.9813.1.S1_at CD919021 - - 2e-4 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.06 2e-5 50 Vitis vinifera 1620757_at CF372931 hypothetical protein LOC100260825 - 4e-3 At1g51600 TIFY2A C.G. S.X.
0.04 2e-5 50 Zea mays Zm.7914.1.A1_at AY103800.1 hypothetical protein LOC100277669 - 5e-11 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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