CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0647600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 60.9 Os03g0647600 AK106398.1 - Nf-Y-A subunit 1e+0 At4g17310 unknown protein S.X. H.G.
0.29 31.1 Os03g0310000 AK060625.1 - Lipolytic enzyme, G-D-S-L family protein 5e-11 At5g18430 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.23 21.2 Os05g0454200 AK101945.1 - Protein of unknown function DUF315 domaincontaining protein 1e-15 At4g38430 ROPGEF1 S.X. H.G.
0.17 12.6 Os07g0539400 BI305420 - Glycoside hydrolase, family 17 protein 1e+0 At2g42930 glycosyl hydrolase family protein 17 S.X. H.G.
0.13 8.2 Os08g0112900 AK105876.1 - Lipolytic enzyme, G-D-S-L family protein 1e-2 At1g71691 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.10 5.7 Os01g0857600 CB965854 - Conserved hypothetical protein 8e-2 At4g17480 palmitoyl protein thioesterase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.1 99.7 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
25.9 99.5 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
20.5 99.1 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
16.9 98.8 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
15.5 98.7 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
13.8 98.5 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
11.7 98.2 GSM99880 TCHW P22_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
10.8 98.1 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
10.5 98.1 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
9.8 98.0 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-23 113 Os07g0158500 9635.m00586 - CCAAT-binding transcription factor, subunit Bfamily protein 4e-1 At4g01985 unknown protein C.G. S.X.
0.07 1e-4 50 Os12g0618600 AK073742.1 - Transcriptional activator HAP2 5e-2 At5g06510 NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10) C.G. S.X.
0.02 6e-4 48 Os03g0766000 AK070596.1 - Conserved hypothetical protein 2e-19 At1g47640 unknown protein C.G. S.X.
0.01 6e-4 48 Os01g0779300 AK121676.1 - Protein kinase domain containing protein 5e-3 At5g06740 lectin protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Arabidopsis thaliana At4g17310 827444 unknown protein F:unknown;P:unknown;C:chloroplast;P - - - C.G. S.X.
0.02 1e-1 40 Glycine max GmaAffx.90539.1.S1_at CF806264 - - 4e-1 At3g15680 zinc finger (Ran-binding) family protein C.G. S.X.
0.20 4e-26 119 Hordeum vulgare Contig11270_at Contig11270 - - 2e-3 At5g12840 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1) C.G. S.X.
0.02 4e-1 38 Populus trichocarpa PtpAffx.219021.1.S1_at pmrna34811 hypothetical protein - 2e+0 At3g56110 PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) C.G. S.X.
0.22 2e-23 111 Triticum aestivum Ta.27414.1.S1_at BQ801561 - - 1e+1 At5g26890 unknown protein C.G. S.X.
0.02 5e-3 42 Vitis vinifera 1617405_at BQ798422 - - 3e-1 At2g42390 protein kinase C substrate, heavy chain-related C.G. S.X.
0.16 6e-25 115 Zea mays Zm.12543.1.A1_at CO529256 nuclear transcription factor Y subunit A-10 - 5e-1 At3g14020 NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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