CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0643100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os03g0643100 AK106587.1 - Conserved hypothetical protein 7e-1 At5g54940 eukaryotic translation initiation factor SUI1, putative S.X. H.G.
0.74 91.4 Os10g0206700 9638.m01230 - - 1e-2 At1g76185 unknown protein S.X. H.G.
0.71 89.6 Os12g0569850 9640.m03712 - - 9e+0 At4g32570 TIFY8 (TIFY DOMAIN PROTEIN 8) S.X. H.G.
0.70 88.4 Os07g0291400 AK110971.1 - Conserved hypothetical protein 1e+0 At1g71290 F-box family protein-related S.X. H.G.
0.68 87.5 Os12g0434150 AK107176.1 - - 8e-1 At2g27680 aldo/keto reductase family protein S.X. H.G.
0.62 81.5 Os11g0417233 NM_184578.1 - - 5e+0 At4g35987 unknown protein S.X. H.G.
0.60 79.7 Os05g0111400 9633.m00124 - - 3e-2 At2g41990 unknown protein S.X. H.G.
0.58 77.0 Os02g0732000 9630.m04891 - - 5e-1 At1g18600 RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12) S.X. H.G.
0.56 76.3 Os01g0522200 9629.m03175 - - 3e+0 At5g12840 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1) S.X. H.G.
0.56 76.3 Os06g0605300 9634.m03865 - Hypothetical protein 2e-1 At5g63340 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.0 99.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.9 99.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.6 99.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.5 99.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.2 99.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.6 99.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.3 99.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.6 99.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.1 99.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.9 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-14 81 Os09g0249300 9637.m00509 - - 1e+1 At5g34830 unknown protein C.G. S.X.
0.04 2e-6 56 Os04g0164400 9632.m00736 - - 2e+0 At3g10526 unknown protein C.G. S.X.
0.04 9e-5 50 Os03g0614600 9631.m04025 - - 2e+0 At1g08465 YAB2 (YABBY2) C.G. S.X.
0.02 2e+0 36 Os08g0277300 9636.m01762 - - 4e+0 At4g19390 - C.G. S.X.
0.01 9e-2 40 Os07g0166800 AK121382.1 - Rad6 (Ubiquitin carrier protein) 1e-29 At2g02760 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) C.G. S.X.
0.01 4e-1 38 Os12g0520200 CB675503 - Phenylalanine ammonia-lyase (EC 4.3.1.5)(Fragment) 2e-5 At3g53260 PAL2 C.G. S.X.
0.01 2e+0 36 Os02g0810500 AY220667.1 - RabGAP/TBC domain containing protein 2e-1 At3g19520 unknown protein C.G. S.X.
0.01 2e+0 36 Os06g0281400 AK121044.1 - DNA topoisomerase I family protein 8e-10 At4g31210 DNA topoisomerase family protein C.G. S.X.
0.01 6e+0 34 Os05g0506300 AK061071.1 - Conserved hypothetical protein 4e-2 At4g25620 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Arabidopsis thaliana At5g54940 835585 eukaryotic translation initiation factor SUI1, putative F:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOABV - - - C.G. S.X.
0.02 1e+0 36 Glycine max Gma.95.1.S1_at BI945082 - - 1e+1 At5g60870 regulator of chromosome condensation (RCC1) family protein C.G. S.X.
0.02 9e-2 38 Hordeum vulgare Contig12752_at Contig12752 - - 2e+0 At3g45577 tRNA-intron endonuclease C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.26979.1.A1_at CV252102 hypothetical protein - 3e-1 At5g54940 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
0.13 3e-9 63 Triticum aestivum TaAffx.78281.1.S1_at CA734925 - - 3e+0 At5g10040 unknown protein C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1621315_at CF405616 hypothetical protein LOC100245710 - 1e-1 At5g46950 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.123.1.A1_at AI665878 - - 8e-1 At5g15200 40S ribosomal protein S9 (RPS9B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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