CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0642600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 96.4 Os03g0642600 9631.m04253 - - 5e-3 At2g48010 RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3) S.X. H.G.
0.60 79.7 Os10g0543700 NM_197601.1 - - 5e-1 At5g19260 unknown protein S.X. H.G.
0.57 77.0 Os07g0414700 NM_188168.1 - Protein of unknown function DUF707 family protein 1e-1 At5g18920 unknown protein S.X. H.G.
0.33 38.8 Os01g0845400 9629.m06194 - - 2e+0 At2g17442 unknown protein S.X. H.G.
0.30 32.7 Os06g0605500 9634.m03868 - - 2e+0 At3g08690 UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) S.X. H.G.
0.27 27.5 Os03g0298900 AK060996.1 - Hypothetical protein 3e+0 At5g47570 unknown protein S.X. H.G.
0.23 21.2 Os08g0250400 9636.m01523 - - 3e-1 At2g32130 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.6 99.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
37.8 99.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.4 99.8 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.9 99.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.5 99.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.3 99.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.4 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.7 99.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.8 99.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 0 1215 Os03g0643200 9631.m04258 - EGF-like calcium-binding domain containing protein 8e-18 At1g30300 unknown protein C.G. S.X.
0.11 3e-12 75 Os02g0623600 AK111596.1 - Protein kinase domain containing protein 3e-4 At1g48210 serine/threonine protein kinase, putative C.G. S.X.
0.06 3e-12 75 Os12g0595800 AK121185.1 - Protein kinase domain containing protein 8e-5 At2g23450 protein kinase family protein C.G. S.X.
0.05 2e-16 89 Os02g0808300 AK108554.1 - Hypothetical protein 7e-1 At5g47610 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 6e-13 77 Os04g0220300 AK058435.1 - Conserved hypothetical protein 2e-1 At2g30290 vacuolar sorting receptor, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-3 44 Arabidopsis thaliana At2g48010 819413 RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3) receptor-like serine/threonine kinase (RKF3) - - - C.G. S.X.
0.01 1e-1 40 Glycine max PsAffx.C24000123_at PsAffx.C24000123 - - 2e-3 At5g11930 glutaredoxin family protein C.G. S.X.
0.06 4e-8 59 Hordeum vulgare Contig12770_at Contig12770 - - 2e-4 At3g17410 serine/threonine protein kinase, putative C.G. S.X.
0.02 1e-1 40 Populus trichocarpa PtpAffx.43837.1.A1_s_at CV256587 hypothetical protein - 3e-6 At4g24026 unknown protein C.G. S.X.
0.08 3e-7 57 Triticum aestivum TaAffx.81407.1.S1_at CA686442 - - 7e-2 At2g41970 protein kinase, putative C.G. S.X.
0.02 4e-4 46 Vitis vinifera 1616189_at CF511570 hypothetical protein LOC100260741 - 6e-18 At1g75820 CLV1 (CLAVATA 1) C.G. S.X.
0.04 8e-6 52 Zea mays Zm.1140.1.S1_at BM073428 hypothetical protein LOC100279272 - 4e-14 At3g49670 BAM2 (BARELY ANY MERISTEM 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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