CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0638100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os03g0638100 9631.m04211 - - 3e+0 At2g22470 AGP2 (ARABINOGALACTAN PROTEIN 2) S.X. H.G.
0.75 91.9 Os12g0639900 9640.m04362 - - 2e-1 At1g52827 unknown protein S.X. H.G.
0.67 87.2 Os12g0115833 9640.m00142 - - 1e+1 At5g11280 unknown protein S.X. H.G.
0.57 77.0 Os11g0630740 9639.m03790 - - 3e-1 At1g64220 TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2) S.X. H.G.
0.57 77.0 Os01g0280100 NM_188135.1 - - 7e-1 At5g28610 - S.X. H.G.
0.46 60.9 Os08g0184900 9636.m00813 - - 2e-2 At4g00130 - S.X. H.G.
0.46 60.9 Os07g0203000 9635.m00998 - - 4e-1 At5g10750 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
82.6 100.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
43.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.8 99.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.8 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.2 99.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.7 99.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.4 99.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.8 99.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 2e-3 44 Os05g0326900 9633.m02351 - - 4e-1 At2g22440 - C.G. S.X.
0.08 4e-1 36 Os01g0149300 NM_184369.1 - - 2e+0 At3g25720 - C.G. S.X.
0.05 4e-1 36 Os08g0330900 9636.m02367 - Cyclin-like F-box domain containing protein 4e+0 At3g54270 sucrose-phosphatase 3 (SPP3) C.G. S.X.
0.04 4e-7 56 Os07g0231500 AK109283.1 - - 1e-1 At5g44570 unknown protein C.G. S.X.
0.04 1e-3 44 Os02g0594300 9630.m03656 - Enhancer of shoot regeneration ESR1 8e-3 At1g53170 ERF8 C.G. S.X.
0.03 4e-1 36 Os04g0602300 AK105720.1 - Conserved hypothetical protein 4e+0 At5g59230 transcription factor-related C.G. S.X.
0.02 8e-2 38 Os03g0654900 AK066712.1 - Conserved hypothetical protein 6e-1 At5g07450 CYCP4 C.G. S.X.
0.02 8e-2 38 Os08g0126500 AK110941.1 - Cyclin-like F-box domain containing protein 2e-1 At5g66050 - C.G. S.X.
0.02 8e-2 38 Os09g0548700 9637.m03197 - Conserved hypothetical protein 1e-2 At2g20930 - C.G. S.X.
0.02 4e-1 36 Os01g0149200 AK069318.1 - Metallothionein-like protein type 2 5e-7 At3g09390 MT2A (METALLOTHIONEIN 2A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At2g22470 816779 AGP2 (ARABINOGALACTAN PROTEIN 2) Encodes arabinogalactan-protein (AGP2). - - - C.G. S.X.
0.04 1e+0 34 Glycine max GmaAffx.82956.1.S1_at BM891392 - - 1e+0 At1g62262 SLAH4 (SLAC1 HOMOLOGUE 4) C.G. S.X.
0.03 6e+0 30 Hordeum vulgare Contig12054_at Contig12054 - - 1e-3 At3g29430 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative C.G. S.X.
0.03 4e+0 32 Populus trichocarpa PtpAffx.68429.2.S1_at BP936193 hypothetical protein - 1e-9 At1g29280 WRKY65 C.G. S.X.
0.05 8e-1 34 Triticum aestivum TaAffx.19681.1.S1_at CA645202 - - 4e+0 At3g12685 - C.G. S.X.
0.05 3e+0 30 Vitis vinifera 1619049_at CF204385.1 - - 4e-1 At3g59620 - C.G. S.X.
0.04 1e+0 32 Zea mays Zm.11756.1.A1_x_at BM380495 Alpha expansin2 - 3e+0 At1g35537 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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