Gene omics information

Query gene ID	Os03g0636800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.2	Os03g0636800	AK073129.1	-	LSTK-1-like kinase	5e-31	At3g04810	ATNEK2 (NIMA-RELATED KINASE 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os02g0669700	AK064519.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e+0	At4g35410	clathrin adaptor complex small chain family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os11g0575600	AK073570.1	-	Lipoxygenase L-2	1e-1	At3g22400	LOX5	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	36.3	Os02g0625900	9630.m03974	-	Conserved hypothetical protein	4e+0	At5g47130	Bax inhibitor-1 family / BI-1 family	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.31	34.5	Os04g0440300	AK071669.1	-	Cyclin-like F-box domain containing protein	3e+0	At3g19410	F-box family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os12g0585200	AK120895.1	-	Hypothetical protein	2e-1	At5g62770	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	Os02g0751100	AK070999.1	-	Peptidase A1, pepsin family protein	7e-6	At2g17760	aspartyl protease family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.1	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.8	98.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2	98.7	GSM195229	Endosperm	GSE7951	Genome-wide gene expression profiling of rice stigma
14.1	98.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7	98.5	GSM159187	SAM, biological rep 2	GSE6893	Expression data for reproductive development in rice
12.3	98.3	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	0	773	Os12g0604700	AK072382.1	-	LSTK-1-like kinase	1e-15	At3g63280	ATNEK4 (NIMA-RELATED KINASE 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	1e-73	280	Os07g0176600	AK067073.1	-	Protein kinase domain containing protein	1e-12	At3g04810	ATNEK2 (NIMA-RELATED KINASE 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	3e-9	65	Os01g0864700	AU172991	-	Protein kinase domain containing protein	3e-51	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	1e-11	73	Os05g0440800	AK073901.1	-	Protein kinase domain containing protein	5e-53	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	3e-9	65	Os02g0590800	AK060204.1	-	Protein kinase domain containing protein	1e-12	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	7e-7	57	Os02g0590700	AK100917.1	-	Conserved hypothetical protein	4e-2	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-2	42	Os01g0797900	AK070899.1	-	Conserved hypothetical protein	2e+0	At3g11030	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	5e-31	137	Arabidopsis thaliana	At3g04810	819641	ATNEK2 (NIMA-RELATED KINASE 2)	Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	40	Glycine max	GmaAffx.54819.1.S1_at	BI426466	-	-	1e-8	At3g04810	ATNEK2 (NIMA-RELATED KINASE 2)	C.G.	S.X.	Please select
0.04	4e-8	59	Hordeum vulgare	Contig9144_at	Contig9144	-	-	1e-15	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	C.G.	S.X.	Please select
0.11	3e-11	71	Populus trichocarpa	PtpAffx.200696.1.S1_at	pmrna1345	hypothetical protein	-	8e-139	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	1e-151	537	Triticum aestivum	TaAffx.98504.1.S1_at	BG607257	-	-	4e-12	At1g54510	ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1)	C.G.	S.X.	Please select
0.01	4e-1	36	Vitis vinifera	1612483_at	CB976945	hypothetical protein LOC100261003	-	1e+0	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	C.G.	S.X.	Please select
0.36	0	636	Zea mays	Zm.4277.2.S1_a_at	BQ704082	-	-	5e-17	At1g54510	ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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