Gene omics information

Query gene ID	Os03g0619400
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os03g0619400	CB653322	-	Chaperonin Cpn60 family protein	1e-57	At5g20890	chaperonin, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os04g0551800	AK121568.1	-	T-complex protein 1, alpha subunit (TCP-1-alpha)(CCT-alpha)	4e-40	At3g20050	ATTCP-1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os06g0687700	AK109357.2	-	T-complex protein 1, eta subunit (TCP-1-eta)(CCT-eta) (HIV-1 Nef interacting protein)	2e-44	At3g11830	chaperonin, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os06g0538000	AK069949.1	-	Chaperonin Cpn60/TCP-1 family protein	5e-83	At5g26360	chaperonin, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os05g0147400	AK062146.1	-	T-complex protein 1, zeta subunit (TCP-1-zeta)(CCT-zeta) (CCT-zeta- 1)	6e-67	At5g16070	chaperonin, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os04g0372800	AK101615.1	-	Nuclear transport factor 2 domain containingprotein	2e-1	At3g61260	DNA-binding family protein / remorin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.1	97.7	GSM275406	Azucena root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
8.1	97.7	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.9	97.3	GSM275410	Bala root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.8	97.3	GSM275412	Azucena root tip Buckled at the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.6	97.3	GSM159186	SAM, biological rep 1	GSE6893	Expression data for reproductive development in rice
6.3	97.2	GSM275414	Azucena root tip_Before the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.3	97.2	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.1	97.1	GSM275409	Bala root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.0	97.0	GSM275408	Bala root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.5	96.8	GSM409427	Nipponbare_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	4e-170	599	Os05g0556700	9633.m04506	-	Cct2-prov protein	3e-62	At5g20890	chaperonin, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-1	38	Os06g0538000	AK069949.1	-	Chaperonin Cpn60/TCP-1 family protein	5e-83	At5g26360	chaperonin, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	8e-1	36	Os06g0161800	AK064664.1	-	Protein of unknown function DUF569 family protein	1e+1	At5g24879	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-2	40	Os05g0537300	AK064553.1	-	-	1e-3	At1g54560	XIE	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e-2	40	Os02g0525400	AK065368.1	-	Molybdenum cofactor synthesis protein 3(Molybdopterin synthase sulfurylase) (MPT synthasesulfurylase)	1e-5	At5g55130	CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	38	Os04g0525900	AK065806.1	-	Major facilitator superfamily protein	1e-18	At5g64500	membrane protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os01g0515300	AK111708.1	-	Protein kinase domain containing protein	1e-1	At3g43740	leucine-rich repeat family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os04g0644400	AK061322.1	-	Proline-rich-like protein	6e-1	At3g55880	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e+0	34	Os01g0361700	9629.m02525	-	Phospholipid/glycerol acyltransferase familyprotein	1e+0	At1g54570	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	4e-38	159	Arabidopsis thaliana	At5g20890	832213	chaperonin, putative	F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:anchored to plasma membrane, cell wall;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	1e-41	171	Glycine max	Gma.4039.3.S1_s_at	BI469904	-	-	4e-129	At5g20890	chaperonin, putative	C.G.	S.X.	Please select
0.40	0	650	Hordeum vulgare	Contig5264_at	Contig5264	-	-	8e-94	At5g20890	chaperonin, putative	C.G.	S.X.	Please select
0.29	2e-34	147	Populus trichocarpa	Ptp.6712.1.S1_at	CV235223	hypothetical protein	-	0	At5g20890	chaperonin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	9e-55	214	Triticum aestivum	Ta.394.1.A1_at	CA662947	-	-	8e-66	At5g20890	chaperonin, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1616988_at	CF516459	-	-	4e+0	At2g04034	-	C.G.	S.X.	Please select
0.39	0	662	Zea mays	Zm.6590.1.A1_at	AY108493.1	Hypothetical protein LOC100191320	-	4e-114	At5g20890	chaperonin, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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