Gene omics information

Query gene ID Os03g0616400
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6483.4Os03g0616400AK071938.1-Plasma membrane Ca2+-ATPase4e-26At2g22950calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)S.X.H.G.
0.5978.0Os03g0824100AK065308.1-TPR-like domain containing protein3e-1At3g56380ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)S.X.H.G.
0.5068.0Os08g0191900AK067587.1-TPR-like domain containing protein3e-16At3g59040pentatricopeptide (PPR) repeat-containing proteinS.X.H.G.
0.5068.0Os02g0539600AK059666.1-Myb, DNA-binding domain containing protein3e-12At5g63420emb2746 (embryo defective 2746)S.X.H.G.
0.3846.9Os03g0157800AK067375.1-3'-5' exonuclease domain containing protein1e-25At5g359103'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing proteinS.X.H.G.
0.3846.9Os06g0652000AB120430.1-DNA directed RNA polymerase (EC 2.7.7.6)3e-8At2g24120SCA3 (SCABRA 3)S.X.H.G.
0.3541.7Os03g0108600AK065776.1-DEAD/DEAH box helicase, N-terminal domaincontaining protein2e-5At3g06980DEAD/DEAH box helicase, putativeS.X.H.G.
0.3338.8Os11g0533100AK120240.1-DEAD/DEAH box helicase, N-terminal domaincontaining protein2e-15At3g02060DEAD/DEAH box helicase, putativeS.X.H.G.
0.3236.3Os02g0291500AK062800.1-Conserved hypothetical protein1e-1At4g37920unknown proteinS.X.H.G.
0.2321.2Os02g0507400AK098971.1-Protein of unknown function DUF493 family protein4e-8At1g27385unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.198.8GSM159183Y Leaf, biological rep 1GSE6893Expression data for reproductive development in rice
12.898.4GSM159185Y Leaf, biological rep 3GSE6893Expression data for reproductive development in rice
11.398.2GSM35713314-day-old seedling, rep 2GSE14275Expression data for heat shock in rice seedlings
10.698.1GSM159184Y Leaf, biological rep 2GSE6893Expression data for reproductive development in rice
9.597.9GSM207566Mudanjiang8 wild type control rep2GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
8.797.8GSM154950Leaf_tZ-treatment_30min_replicate 3GSE6719Cytokinin responsive genes in rice
8.197.7GSM207567Mudanjiang8 wild type control rep3GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
7.697.5GSM375765gid1-3_ shoot_replicate 1GSE15046Transcriptome analysis of gibberellin-signaling mutants in rice
7.297.4GSM154949Leaf_tZ-treatment_30min_replicate 2GSE6719Cytokinin responsive genes in rice
7.197.4GSM375767gid1-3_ shoot_replicate 3GSE15046Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.530676Os12g0586600AK100436.1-Plasma membrane Ca2+-ATPase2e-59At2g22950calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)C.G.S.X.
0.101e-39167Os03g0203700AK121250.1-Plasma membrane Ca2+-ATPase1e-63At4g37640ACA2 (CALCIUM ATPASE 2)C.G.S.X.
0.097e-1791Os11g01404009640.m00336-Calcium-translocating P-type ATPase, PMCA-typefamily protein2e-24At3g57330ACA11 (autoinhibited Ca2+-ATPase 11)C.G.S.X.
0.074e-965Os04g0605500AK120057.1-Calcium-transporting ATPase 8, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8)3e-30At3g21180ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)C.G.S.X.
0.063e-1069Os08g0517200AK058787.1-Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9)1e-39At4g29900ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10)C.G.S.X.
0.052e-759Os02g01767009630.m00757-Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9)4e-47At3g21180ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.284e-26121Arabidopsis thalianaAt2g22950816826calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV---C.G.S.X.
0.233e-52208Glycine maxGma.1178.1.S1_a_atAF195029.1plasma membrane Ca2+-ATPase-2e-74At1g27770ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)C.G.S.X.
0.375e-172605Hordeum vulgareContig9357_atContig9357--2e-42At1g27770ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)C.G.S.X.
0.275e-51204Populus trichocarpaPtpAffx.203064.1.S1_atpmrna6068autoinhibited calcium ATPase-3e-82At4g37640ACA2 (CALCIUM ATPASE 2)C.G.S.X.
0.215e-161569Triticum aestivumTaAffx.50789.1.S1_atCA735312--3e-13At1g27770ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)C.G.S.X.
0.242e-53210Vitis vinifera1613557_atBM436858--4e-66At4g37640ACA2 (CALCIUM ATPASE 2)C.G.S.X.
0.085e-859Zea maysZm.8105.1.A1_atBM379418--1e-3At4g37640ACA2 (CALCIUM ATPASE 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006812The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
LGO:0006816The directed movement of calcium (Ca) ions into, out of, within or between cells.
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
LGO:0015992The directed movement of protons (hydrogen ions) into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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