CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0616300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os03g0616300 AK102930.1 - DNA-directed polymerase kappa 2e-8 At1g49980 DNA-directed DNA polymerase/ damaged DNA binding S.X. H.G.
0.83 95.8 Os07g0598300 AK122151.1 - SNF2-related domain containing protein 3e-11 At5g07810 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein S.X. H.G.
0.80 94.6 Os08g0166500 AK103907.1 - Hypothetical protein 5e-2 At3g09735 DNA-binding S1FA family protein S.X. H.G.
0.67 87.2 Os04g0528400 AK101159.1 - Hus1-like protein family protein 2e-8 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) S.X. H.G.
0.60 79.7 Os03g0849700 AK111868.1 - TPR-like domain containing protein 1e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.56 76.3 Os08g0520400 AK064309.1 - Conserved hypothetical protein 2e+0 At5g23940 EMB3009 (embryo defective 3009) S.X. H.G.
0.56 76.3 Os02g0772300 AK071492.1 - GCN5-related N-acetyltransferase domain containingprotein 3e+0 At5g49540 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.4 99.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.0 99.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.7 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-1 38 Os05g0293400 9633.m02008 - - 2e-1 At4g33480 unknown protein C.G. S.X.
0.01 6e-1 38 Os06g0210900 AK110332.1 - Lipase, class 3 family protein 6e-2 At2g30550 lipase class 3 family protein C.G. S.X.
0.01 6e-1 38 Os07g0196300 AK101511.1 - Cyclin-like F-box domain containing protein 3e+0 At5g23820 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.01 6e-1 38 Os08g0230200 AK069639.1 - - 5e-3 At1g16860 merozoite surface protein-related C.G. S.X.
0.01 6e-1 38 Os08g0344100 AK111861.1 - Histone deacetylase 2e-14 At5g63110 HDA6 (HISTONE DEACETYLASE 6) C.G. S.X.
0.01 2e+0 36 Os01g0593100 NM_192598.1 - Hypothetical protein 2e+0 At1g43330 myb family protein-related C.G. S.X.
0.01 2e+0 36 Os01g0689300 CF316434 - Protein of unknown function HHE domain containingprotein 4e-26 At3g18290 EMB2454 (embryo defective 2454) C.G. S.X.
0.01 2e+0 36 Os01g0881500 AK067457.1 - SCARECROW gene regulator-like (Phytochrome Asignal transduction 1 protein) 1e-6 At1g21450 SCL1 (SCARECROW-LIKE 1) C.G. S.X.
0.01 2e+0 36 Os04g0110600 AK065187.1 - Fus-prov protein 2e-2 At2g17975 zinc finger (Ran-binding) family protein C.G. S.X.
0.01 2e+0 36 Os07g0110900 AK058987.1 - Conserved hypothetical protein 9e-2 At4g21720 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-8 61 Arabidopsis thaliana At1g49980 841422 DNA-directed DNA polymerase/ damaged DNA binding F:damaged DNA binding, DNA-directed DNA polymerase activity;P:DNA repair;C:membrane;BOMFAP - - - C.G. S.X.
0.01 2e+0 36 Glycine max Gma.12827.2.S1_a_at AI938995 - - 1e+0 At3g47650 bundle-sheath defective protein 2 family / bsd2 family C.G. S.X.
0.01 9e+0 32 Hordeum vulgare Contig24769_at Contig24769 - - 4e+0 At4g10767 SCRL21 (SCR-Like 21) C.G. S.X.
0.12 2e-15 85 Populus trichocarpa PtpAffx.201194.1.S1_at pmrna2361 hypothetical protein - 4e-51 At1g49980 DNA-directed DNA polymerase/ damaged DNA binding C.G. S.X.
0.01 5e+0 34 Triticum aestivum TaAffx.143995.8.S1_at AY485644 - - 2e-2 At2g29500 17.6 kDa class I small heat shock protein (HSP17.6B-CI) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1611380_at CF512134 - - 1e+0 At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative C.G. S.X.
0.01 8e+0 32 Zea mays Zm.9808.1.A1_at CF628817 hypothetical protein LOC100194097 - 7e+0 At4g20990 ACA4 (ALPHA CARBONIC ANHYDRASE 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006281 The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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