CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0607400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os03g0607400 AK069904.1 - Natural resistance-associated macrophage proteinfamily protein 1e-9 At1g47240 NRAMP2 S.X. H.G.
0.77 93.1 Os08g0161800 NM_189095.1 - Cholinephosphate cytidylyltransferase 4e-10 At2g32260 cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative S.X. H.G.
0.57 77.0 Os06g0684500 AK100859.1 - Conserved hypothetical protein 3e+0 At1g12790 - S.X. H.G.
0.43 55.4 Os03g0136400 AK121484.1 - Inorganic phosphate transporter 1 6e-9 At5g43340 PHT6 S.X. H.G.
0.33 38.8 Os08g0469400 9636.m03673 - - 4e+0 At4g35990 - S.X. H.G.
0.23 21.2 Os07g0205900 AK069835.1 - ARM repeat fold domain containing protein 1e-1 At2g41830 cyclin-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.4 99.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.5 99.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
29.0 99.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.6 99.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.2 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.4 99.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.0 99.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.3 99.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.9 99.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 5e-97 357 Os12g0581600 AK071485.1 - Integral membrane protein 7e-8 At1g47240 NRAMP2 C.G. S.X.
0.15 1e-54 216 Os03g0208500 AK065481.1 - Integral membrane protein 1e-12 At5g67330 ATNRAMP4 C.G. S.X.
0.07 7e-50 200 Os01g0732900 NM_191548.1 - Hypothetical protein 5e+0 At2g35100 ARAD1 (ARABINAN DEFICIENT 1) C.G. S.X.
0.04 5e-20 101 Os05g0536900 AK105140.1 - Ras-related protein Rab7 8e-15 At3g18820 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) C.G. S.X.
0.04 3e-18 95 Os08g0480000 AK067748.1 - Multi antimicrobial extrusion protein MatE familyprotein 1e+0 At5g10420 antiporter/ drug transporter C.G. S.X.
0.03 2e-19 99 Os02g0491300 9630.m02763 - Conserved hypothetical protein 1e-3 At3g63095 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-9 65 Arabidopsis thaliana At1g47240 841127 NRAMP2 Member of the NRAMP2 gene family of metal ion transporters. - - - C.G. S.X.
0.07 7e-9 63 Glycine max GmaAffx.46439.1.S1_at BE806279 - - 5e-25 At1g47240 NRAMP2 C.G. S.X.
0.03 7e-10 65 Hordeum vulgare Contig24105_at Contig24105 - - 9e-2 At2g23150 NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) C.G. S.X.
0.12 5e-13 77 Populus trichocarpa PtpAffx.218535.1.S1_at pmrna34191 nramp transporter - 4e-64 At2g23150 NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) C.G. S.X.
0.11 2e-27 125 Triticum aestivum TaAffx.5858.1.S1_at CA697177 - - 7e-2 At3g51060 STY1 (STYLISH 1) C.G. S.X.
0.03 4e-10 65 Vitis vinifera 1617338_at BQ793025 hypothetical protein LOC100262579 - 2e-22 At1g47240 NRAMP2 C.G. S.X.
0.03 9e-6 52 Zea mays Zm.13647.1.S1_at AY107242.1 metal transporter Nramp3 - 3e-12 At5g67330 ATNRAMP4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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