CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0601400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0601400 9631.m03890 - - 5e+0 At5g06470 glutaredoxin family protein S.X. H.G.
0.77 93.1 Os01g0367800 NM_193806.1 - - 3e-1 At5g09310 unknown protein S.X. H.G.
0.60 79.7 Os05g0175000 9633.m00739 - - 3e+0 At4g22000 unknown protein S.X. H.G.
0.60 79.7 Os11g0294200 9639.m01755 - - 6e-1 At1g73830 BEE3 (BR ENHANCED EXPRESSION 3) S.X. H.G.
0.60 79.7 Os06g0614901 9634.m03957 - - 6e-1 At4g01440 nodulin MtN21 family protein S.X. H.G.
0.48 63.7 Os08g0505600 9636.m03993 - - 7e-1 At5g58890 AGL82 (AGAMOUS-LIKE 82) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.8 99.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.9 99.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.8 99.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.6 99.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.6 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
27.2 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.1 99.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.9 99.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.7 99.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.1 99.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 6e-35 149 Os06g0487000 9634.m02800 - - 3e+0 At5g20310 - C.G. S.X.
0.29 4e-85 315 Os08g0258900 9636.m01596 - - 1e+0 At5g13460 IQD11 (IQ-domain 11) C.G. S.X.
0.07 2e-10 67 Os12g0590200 9640.m03903 - - 8e-1 At2g17240 unknown protein C.G. S.X.
0.06 4e-8 59 Os07g0610900 9635.m04205 - - 9e-1 At5g58390 peroxidase, putative C.G. S.X.
0.03 6e-1 36 Os02g0532300 AK061527.1 - Alpha/beta hydrolase fold domain containingprotein 7e-1 At3g54240 hydrolase, alpha/beta fold family protein C.G. S.X.
0.01 6e-1 36 Os07g0537000 NM_185880.1 - Receptor protein kinase 1e-2 At4g23140 CRK6 (CYSTEINE-RICH RLK 6) C.G. S.X.
0.01 6e-1 36 Os07g0541000 AK100722.1 - Receptor protein kinase 1e-9 At3g14840 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e+0 32 Arabidopsis thaliana At5g06470 830535 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;OBPM - - - C.G. S.X.
0.03 7e+0 32 Glycine max HgAffx.23933.2.S1_at CK349165 - - 7e-1 At5g66780 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HT09J04u_x_at HT09J04u - - 6e+0 At2g16016 unknown protein C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.75760.1.A1_at CV258401 type-a response regulator - 2e+0 At5g13410 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein C.G. S.X.
0.03 1e+0 34 Triticum aestivum Ta.11455.1.A1_at BQ170143 - - 3e+0 At4g10115 SCRL20 (SCR-Like 20) C.G. S.X.
0.04 4e-1 34 Vitis vinifera 1620141_at CF207513 - - 5e+0 At4g15110 CYP97B3 C.G. S.X.
0.03 2e+0 32 Zea mays Zm.15779.1.A1_at CD484306 - - 7e-2 At3g14670 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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