CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0596400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.1 Os03g0596400 AK107535.1 - Protein of unknown function XH domain containingprotein 4e-1 At3g54826 - S.X. H.G.
0.80 94.6 Os02g0196100 AK108729.1 - The start codon is not identified. 1e-7 At3g20880 zinc finger (C2H2 type) protein (WIP4) S.X. H.G.
0.77 93.1 Os02g0288600 9630.m01770 - BURP domain containing protein 3e+0 At5g53895 unknown protein S.X. H.G.
0.77 93.1 Os03g0284700 AK069841.1 - Hypothetical protein 2e+0 At5g35490 unknown protein S.X. H.G.
0.71 89.6 Os07g0190600 AK070975.1 - Nucleic acid-binding OB-fold domain containingprotein 3e-1 At3g05490 RALFL22 (ralf-like 22) S.X. H.G.
0.71 89.6 Os03g0308600 AK070495.1 - - 7e+0 At5g46430 60S ribosomal protein L32 (RPL32B) S.X. H.G.
0.63 82.7 Os12g0207000 AY551912.1 - Transcription factor 9e-21 At3g58780 SHP1 (SHATTERPROOF 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
88.4 100.0 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
84.0 100.0 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
74.8 99.9 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
16.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 8e-152 539 Os12g0405300 AK070969.1 - Hypothetical protein 4e+0 At5g27840 TOPP8 C.G. S.X.
0.13 7e-103 377 Os09g0343500 AK061057.1 - Protein of unknown function DUF1263 domaincontaining protein 4e+0 At4g29033 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 38 Arabidopsis thaliana At3g54826 2745966 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO - - - C.G. S.X.
0.01 2e-3 46 Glycine max GmaAffx.37918.1.A1_at BU546919 - - 9e-2 At3g19184 DNA binding C.G. S.X.
0.05 5e-5 50 Hordeum vulgare Contig21093_at Contig21093 - - 3e-1 At3g12550 XH/XS domain-containing protein / XS zinc finger domain-containing protein C.G. S.X.
0.01 3e-2 42 Populus trichocarpa PtpAffx.82306.1.A1_at CV252383 - - 3e-7 At4g01780 XH/XS domain-containing protein C.G. S.X.
0.09 2e-12 75 Triticum aestivum TaAffx.37505.1.A1_at BJ276118 - - 2e+0 At1g31720 unknown protein C.G. S.X.
0.01 3e-2 40 Vitis vinifera 1618547_at CD013720 - - 3e-54 At5g52520 OVA6 (OVULE ABORTION 6) C.G. S.X.
0.09 3e-12 73 Zea mays Zm.12785.1.A1_at CA398728 - - 3e+0 At4g22105 SCRL26 (SCR-Like 26) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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