CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0563300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.69 87.9 Os03g0563300 AK070720.1 - Magnesium-chelatase subunit chlI, chloroplastprecursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase)(Protein CS/CH-42) 1e-31 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) S.X. H.G.
0.75 91.9 Os05g0232200 AK071646.1 - Conserved hypothetical protein 3e+0 At5g15190 unknown protein S.X. H.G.
0.57 77.0 Os05g0488600 9633.m03832 - Myb, DNA-binding domain containing protein 2e-25 At3g04030 myb family transcription factor S.X. H.G.
0.46 60.9 Os10g0572100 AK073002.1 - Protein of unknown function UPF0005 family protein 3e-4 At5g46610 unknown protein S.X. H.G.
0.38 46.9 Os02g0697900 AK119485.1 - Hypothetical protein 4e-27 At1g32060 PRK (PHOSPHORIBULOKINASE) S.X. H.G.
0.36 44.0 Os10g0356366 CR288737 - - 3e-30 Atcg00510 - S.X. H.G.
0.33 38.8 Os06g0108900 AK101029.1 - Homeobox domain containing protein 1e-12 At5g41410 BEL1 (BELL 1) S.X. H.G.
0.29 31.1 Os12g0292900 AK064818.1 - ATP-binding region, ATPase-like domain containingprotein 5e-6 At1g67840 CSK (CHLOROPLAST SENSOR KINASE) S.X. H.G.
0.24 22.4 Os08g0130400 AK065929.1 - Hypothetical protein 9e-1 At1g30520 AAE14 (Acyl-Activating Enzyme 14) S.X. H.G.
0.23 21.2 Os04g0462300 AK109651.1 - Conserved hypothetical protein 4e-2 At3g25805 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.8 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM421694 XOO, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.5 98.6 GSM174890 G mock 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
14.3 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM421674 XOC, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.9 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM421690 XOO, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 0 1723 Os10g0339400 AK066876.1 - IQ calmodulin-binding region domain containingprotein 7e-44 At4g33200 XI-I C.G. S.X.
0.19 0 852 Os06g0270900 AF162665.1 - RF2 (EC 1.2.1.3) (T cytoplasm male sterilityrestorer factor 2) 1e-53 At1g23800 ALDH2B7 C.G. S.X.
0.02 3e-2 42 Os06g0157800 AK121504.1 - Conserved hypothetical protein 5e+0 At2g37190 60S ribosomal protein L12 (RPL12A) C.G. S.X.
0.01 2e-3 46 Os03g0118800 AK071039.1 - HMG-CoA synthase 2e-32 At4g11820 MVA1 C.G. S.X.
0.01 3e-2 42 Os04g0283800 AK109869.1 - Octicosapeptide/Phox/Bem1p domain containingprotein 3e+0 At4g24026 unknown protein C.G. S.X.
0.01 3e-2 42 Os10g0327400 9638.m01495 - - 2e+0 At5g67190 AP2 domain-containing transcription factor, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 1e-31 139 Arabidopsis thaliana At5g45930 834633 CHLI2 (MAGNESIUM CHELATASE I2) encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Has ATPase activity, regulated by TRX-f. Involved in the assembly of the Mg chelatase complex. - - - C.G. S.X.
0.20 2e-40 169 Glycine max Gma.5672.1.A1_at D45857.1 - - 3e-47 At4g18480 CHLI1 C.G. S.X.
0.57 0 900 Hordeum vulgare Contig5341_at Contig5341 - - 8e-4 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) C.G. S.X.
0.25 9e-33 143 Populus trichocarpa PtpAffx.209915.1.S1_at pmrna19541 hypothetical protein - 2e-100 At4g18480 CHLI1 C.G. S.X.
0.53 0 886 Triticum aestivum Ta.1511.2.S1_x_at CA600977 - - 8e-7 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) C.G. S.X.
0.18 3e-44 178 Vitis vinifera 1614655_at CB969062 hypothetical protein LOC100267459 - 2e-61 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) C.G. S.X.
0.52 6e-164 577 Zea mays Zm.18314.1.S1_at CO520519 oil yellow1 - 3e+0 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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