CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0425200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os03g0425200 AK101293.1 - Inosine/uridine-preferring nucleoside hydrolasedomain containing protein 5e-14 At2g36310 URH1 (URIDINE-RIBOHYDROLASE 1) S.X. H.G.
0.73 91.1 Os08g0483600 AK099543.1 - Conserved hypothetical protein 4e-1 At2g27470 NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11) S.X. H.G.
0.50 68.0 Os08g0269800 AK120307.1 - Leucine-rich repeat, cysteine-containingcontaining protein 2e+0 At4g39260 GR-RBP8 S.X. H.G.
0.43 55.4 Os01g0259600 AK066193.1 - Molybdenum cofactor biosynthesis protein domaincontaining protein 4e-25 At5g03430 phosphoadenosine phosphosulfate (PAPS) reductase family protein S.X. H.G.
0.32 36.3 Os07g0204900 AK065213.1 - Zeta-carotene desaturase (Fragment) 1e-19 At3g04870 ZDS (ZETA-CAROTENE DESATURASE) S.X. H.G.
0.31 34.5 Os12g0276100 AK062912.1 - Hypothetical protein 2e+0 At3g17830 DNAJ heat shock family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.0 97.0 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.7 96.9 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.5 96.8 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.1 96.6 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.0 96.6 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.9 96.5 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.7 96.4 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.7 96.4 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.5 96.3 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.4 96.2 GSM421678 XOC, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-7 57 Os08g0557900 AK065324.1 - Inosine/uridine-preferring nucleoside hydrolasedomain containing protein 3e-6 At2g36310 URH1 (URIDINE-RIBOHYDROLASE 1) C.G. S.X.
0.01 9e-2 40 Os01g0697250 9631.m01591 - - 2e+0 At5g54290 cytochrome c biogenesis protein family C.G. S.X.
0.01 9e-2 40 Os07g0190600 AK070975.1 - Nucleic acid-binding OB-fold domain containingprotein 3e-1 At3g05490 RALFL22 (ralf-like 22) C.G. S.X.
0.01 9e-2 40 Os07g0190700 AK111434.1 - - 6e-2 At3g47960 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.01 3e-1 38 Os05g0345700 AK121350.1 - Protein of unknown function DUF569 family protein 7e-1 At1g08880 H2AXA C.G. S.X.
0.01 3e-1 38 Os10g0550900 AK121010.1 - Proline dehydrogenase domain containing protein 9e-1 At4g18620 - C.G. S.X.
0.01 3e-1 38 Os12g0572000 AB064519.1 - Myb, DNA-binding domain containing protein 2e-16 At2g37630 AS1 (ASYMMETRIC LEAVES 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-14 79 Arabidopsis thaliana At2g36310 818204 URH1 (URIDINE-RIBOHYDROLASE 1) F:hydrolase activity, inosine nucleosidase activity, adenosine nucleosidase activity, uridine nucleosidase activity;P:uridine catabolic process;C:cytosol;BOMFPA - - - C.G. S.X.
0.04 1e-6 56 Glycine max GmaAffx.44627.1.A1_at BE657185 - - 3e+0 At1g05620 URH2 (URIDINE-RIBOHYDROLASE 2) C.G. S.X.
0.43 0 769 Hordeum vulgare Contig6027_at Contig6027 - - 2e-5 At2g31890 RAP C.G. S.X.
0.19 8e-23 109 Populus trichocarpa Ptp.4061.1.S1_at CN524596 hypothetical protein - 4e-26 At1g05620 URH2 (URIDINE-RIBOHYDROLASE 2) C.G. S.X.
0.42 4e-144 511 Triticum aestivum Ta.28692.2.S1_s_at BJ317817 - - 1e-1 At5g59970 histone H4 C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1608876_at CA817147 hypothetical protein LOC100261976 - 2e-9 At1g47970 unknown protein C.G. S.X.
0.56 0 652 Zea mays Zm.1686.1.A1_at CF630564 hypothetical protein LOC100193643 - 5e-5 At1g05620 URH2 (URIDINE-RIBOHYDROLASE 2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage