CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0413400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os03g0413400 BX899056 - Glycosyl transferase, family 8 protein 2e-1 At2g22640 BRK1 (BRICK1) S.X. H.G.
0.21 17.9 Os03g0242200 AK071529.1 - Ras GTPase family protein 9e-16 At5g09910 ATP binding / GTP binding / transcription factor binding S.X. H.G.
0.10 5.7 Os09g0559800 AK071542.1 - Transporter-like protein 2e-7 At3g13050 transporter-related S.X. H.G.
0.07 3.7 Os04g0600400 AK072894.1 - Conserved hypothetical protein 6e-1 At2g35470 unknown protein S.X. H.G.
0.05 2.5 Os06g0323401 AK069903.1 - - 6e-63 At5g47200 ATRAB1A S.X. H.G.
0.03 1.4 Os06g0728600 CB630800 - Calcium-binding EF-hand domain containing protein 5e-1 At1g20760 calcium-binding EF hand family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.3 96.7 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
4.8 96.5 GSM281585 Rice Zhonghua11, biological rep3 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
4.6 96.3 GSM262010 Nipponbare, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.6 96.3 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.3 96.1 GSM281588 Rice mutant dst, biological rep3 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
4.0 95.9 GSM262012 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.8 95.7 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
3.6 95.5 GSM262018 Nipponbare, 11 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.6 95.5 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-3 44 Os04g0425100 AK111894.1 - The start codon is not identified. 1e+0 At5g62130 Per1-like protein-related C.G. S.X.
0.02 4e-8 61 Os10g0363100 AK061910.1 - Glycosyltransferase QUASIMODO1 (EC 2.4.1.-) 3e-20 At4g38270 GAUT3 (Galacturonosyltransferase 3) C.G. S.X.
0.02 2e+0 34 Os01g0165800 BI806247 - Conserved hypothetical protein 1e+0 At4g12450 unknown protein C.G. S.X.
0.02 2e+0 34 Os08g0562800 AK103815.1 - Multi antimicrobial extrusion protein MatE familyprotein 4e-6 At4g25640 MATE efflux family protein C.G. S.X.
0.01 2e-3 46 Os01g0501000 AK072794.1 - Conserved hypothetical protein 4e-2 At1g02405 proline-rich family protein C.G. S.X.
0.01 2e-3 46 Os07g0681700 AK103213.1 - Glycosyl transferase, family 8 protein 9e-2 At2g38650 GAUT7 (GALACTURONOSYLTRANSFERASE 7) C.G. S.X.
0.01 4e-2 42 Os02g0498700 AK069572.1 - Glycosyltransferase QUASIMODO1 (EC 2.4.1.-) 1e-77 At3g25140 QUA1 (QUASIMODO 1) C.G. S.X.
0.01 4e-2 42 Os11g0592300 AK110778.1 - Glycosyl transferase, family 8 protein 4e-2 At4g38270 GAUT3 (Galacturonosyltransferase 3) C.G. S.X.
0.01 4e-1 36 Os06g0175500 AK058599.1 - Epsin, N-terminal domain containing protein 8e-11 At5g35200 epsin N-terminal homology (ENTH) domain-containing protein C.G. S.X.
0.01 2e+0 34 Os03g0349000 AK099999.1 - Nucleoporin interacting component family protein 3e-14 At2g41620 nucleoporin interacting component family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 36 Arabidopsis thaliana At2g22640 816795 BRK1 (BRICK1) Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Required for accumulation of SCAR1 protein in vivo. Selectively stabilizes SCAR2. - - - C.G. S.X.
0.03 5e+0 32 Glycine max HgAffx.8498.1.S1_at CB380003 - - 5e+0 At3g26855 - C.G. S.X.
0.20 7e-12 69 Hordeum vulgare Contig12799_at Contig12799 - - 3e-6 At2g20810 GAUT10 (GALACTURONOSYLTRANSFERASE 10) C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.132157.1.A1_at DN487988 - - 2e-3 At5g21060 homoserine dehydrogenase family protein C.G. S.X.
0.32 7e-20 97 Triticum aestivum Ta.9211.2.A1_at CD879802 - - 5e+0 At4g23170 EP1 C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1622568_at AY427178.1 - - 6e-1 At1g52270 unknown protein C.G. S.X.
0.20 5e-22 103 Zea mays Zm.17090.1.S1_at AW155707 transferase, transferring glycosyl groups - 2e-4 At2g20810 GAUT10 (GALACTURONOSYLTRANSFERASE 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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