CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0404800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os03g0404800 AK099537.1 - 3-beta hydroxysteroid dehydrogenase/isomerasefamily protein 4e-2 At1g47290 AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) S.X. H.G.
0.63 82.7 Os04g0107700 AK110974.1 - Peptidase C1A, papain family protein 3e-3 At3g19400 cysteine proteinase, putative S.X. H.G.
0.60 79.7 Os04g0196200 9632.m01071 - O-methyltransferase, family 2 domain containingprotein 1e-1 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) S.X. H.G.
0.31 34.5 Os05g0365600 CB096565 - Hydroxyisourate hydrolase 2e+0 At3g60130 BGLU16 (BETA GLUCOSIDASE 16) S.X. H.G.
0.30 32.7 Os06g0192300 9634.m00877 - - 3e-1 At1g64340 unknown protein S.X. H.G.
0.09 4.9 Os11g0439600 AK069955.1 - Nod factor binding lectin-nucleotidephosphohydrolase 2e-1 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.0 99.7 GSM99867 TCHW P10_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
29.3 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
27.7 99.6 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
20.0 99.1 GSM99868 TCHW P11_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
16.3 98.8 GSM387562 Wild-type, biological rep. 1 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
14.3 98.6 GSM116195 Seedling_Control_rep1 GSE5167 Rice seedling hormone treatment
11.6 98.2 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
11.5 98.2 GSM387561 Transgenic line 22, biological rep. 3 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
10.4 98.1 GSM116401 Seedling_BAP treated_rep1 GSE5167 Rice seedling hormone treatment
10.2 98.0 GSM159269 Cold stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 9e-14 79 Os03g0405000 AK070839.1 - 3-beta hydroxysteroid dehydrogenase/isomerasefamily protein 1e-24 At2g26260 AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2) C.G. S.X.
0.02 2e-2 42 Os11g0174600 9639.m00674 - - 3e+0 At1g10586 transcription regulator C.G. S.X.
0.02 2e-2 42 Os11g0175000 AK109815.1 - Hypothetical protein 3e+0 At5g19050 unknown protein C.G. S.X.
0.02 7e-2 40 Os11g0175200 9639.m00680 - - 6e-1 At5g55570 unknown protein C.G. S.X.
0.01 7e-2 40 Os09g0432300 9637.m02286 - AAA ATPase, central region domain containingprotein 1e-11 At4g25835 AAA-type ATPase family protein C.G. S.X.
0.01 7e-2 40 Os11g0175300 AK072817.1 - Hypothetical protein 2e-1 At1g53035 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 40 Arabidopsis thaliana At1g47290 841132 AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) Encodes an enzyme with 3β-hydroxysteroid dehydrogenase/C4-decarboxylase activity in vitro. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the Arabidopsis gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound. - - - C.G. S.X.
0.02 2e-1 38 Glycine max GmaAffx.83807.2.S1_s_at BU091633 - - 8e-1 At4g30730 unknown protein C.G. S.X.
0.03 3e-1 36 Hordeum vulgare Contig13932_at Contig13932 - - 3e-1 At3g29170 unknown protein C.G. S.X.
0.06 2e-4 48 Populus trichocarpa PtpAffx.206624.1.S1_s_at pmrna13152 hypothetical protein - 3e-21 At1g47290 AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) C.G. S.X.
0.08 1e-5 52 Triticum aestivum Ta.2850.2.S1_at BE213515 - - 7e-3 At2g26260 AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1616137_at CF512936 hypothetical protein LOC100241403 - 2e-1 At4g24250 MLO13 (MILDEW RESISTANCE LOCUS O 13) C.G. S.X.
0.04 1e-3 44 Zea mays Zm.15457.1.S1_at CD448433 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating - 2e-13 At2g26260 AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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