Gene omics information

Query gene ID	Os03g0399000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	91.9	Os03g0399000	AK069492.1	-	Pectinesterase family protein	1e-3	At3g06830	pectinesterase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os01g0270700	NM_188051.1	-	Phosphatidylinositol 3- and 4-kinase domaincontaining protein	7e-1	At2g24060	translation initiation factor 3 (IF-3) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os07g0620600	AK070250.1	-	Conserved hypothetical protein	9e-1	At4g24990	ATGP4	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os07g0240200	AK068978.1	-	Beta-1,3 glucanase precursor (EC 3.2.1.39)	3e+0	At3g46570	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os02g0815100	AK108780.1	-	C2 domain containing protein	6e-1	At3g06610	DNA-binding enhancer protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os01g0914700	AK069261.1	-	Peptidase A22B, minor histocompatibility antigenH13 family protein	3e-4	At1g05820	aspartic-type endopeptidase/ peptidase	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os06g0590600	AK101025.1	-	Beta-1,3-glucanase-like protein	1e-5	At5g64790	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
193.3	100.0	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
33.8	99.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
31.8	99.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.1	98.8	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.3	98.3	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9	98.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6	97.9	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	0	1193	Os03g0398900	AK107457.1	-	Conserved hypothetical protein	9e-4	At3g06830	pectinesterase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	4e-48	194	Os09g0433700	AK072369.1	-	Pectinmethylesterase precursor (EC 3.1.1.11)(Fragment)	7e-2	At4g15980	pectinesterase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.12	1e-29	133	Os08g0450200	AK072779.1	-	Pectinmethylesterase precursor (EC 3.1.1.11)(Fragment)	7e-2	At1g11580	PMEPCRA (METHYLESTERASE PCR A)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	4e-17	91	Os11g0172100	BU672886	-	Pectinesterase family protein	1e+0	At3g19600	phosphoprotein phosphatase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	2e-13	79	Os01g0254300	NM_187890.1	-	Pectinesterase (EC 3.1.1.11) (Fragment)	1e-3	At3g06830	pectinesterase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	6e-13	77	Os04g0458900	AK121454.1	-	Pectin methylesterase-like protein	7e-2	At2g47030	VGDH1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	6e-13	77	Os08g0450100	AK058651.1	-	Pectinesterase (EC 3.1.1.11) (Fragment)	2e-2	At1g11370	pectinesterase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-3	46	Arabidopsis thaliana	At3g06830	819867	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-3	44	Glycine max	PsAffx.C81000024_at	PsAffx.C81000024	-	-	1e-1	At2g01755	unknown protein	C.G.	S.X.	Please select
0.03	8e-3	42	Hordeum vulgare	Contig11235_at	Contig11235	-	-	3e-12	At3g01790	ribosomal protein L13 family protein	C.G.	S.X.	Please select
0.02	9e-2	40	Populus trichocarpa	PtpAffx.216013.1.S1_at	pmrna30544	hypothetical protein	-	2e-1	At5g49180	pectinesterase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	1e-21	105	Triticum aestivum	Ta.5588.1.A1_at	BJ249930	-	-	9e-3	At3g06830	pectinesterase family protein	C.G.	S.X.	Please select
0.04	3e-7	56	Vitis vinifera	1610996_at	BQ794786	pectinesterase	-	2e-9	At1g53840	ATPME1	C.G.	S.X.	Please select
0.17	7e-40	165	Zea mays	Zm.2263.1.A1_at	AW330859	-	-	7e-5	At2g43050	ATPMEPCRD	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0042545	The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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