CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0396900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0396900 AK071398.1 - PIMT 6e-6 At1g45231 - S.X. H.G.
0.80 94.6 Os03g0749800 AK111770.1 - Protein kinase 3e-22 At5g20930 TSL (TOUSLED) S.X. H.G.
0.77 93.1 Os02g0591600 AK060151.1 - WD40-like domain containing protein 1e-1 At2g37190 60S ribosomal protein L12 (RPL12A) S.X. H.G.
0.73 91.1 Os10g0575800 AK120242.1 - ARM repeat fold domain containing protein 6e-1 At4g36791 unknown protein S.X. H.G.
0.61 81.2 Os07g0606500 AK070274.1 - ATP-dependent RNA helicase, eIF-4A family 8e-6 At5g08110 DEAD/DEAH box helicase, putative S.X. H.G.
0.55 73.7 Os07g0177100 AK064551.1 - MMS19, N-terminal domain containing protein 6e-2 At2g26060 emb1345 (embryo defective 1345) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.7 99.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.6 99.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.4 99.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.0 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.7 99.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-2 44 Os10g0447900 AK072242.1 - Conserved hypothetical protein 6e-12 At1g02260 transmembrane protein, putative C.G. S.X.
0.01 4e-2 42 Os03g0836600 AK119272.1 - Conserved hypothetical protein 2e-2 At3g20410 CPK9 (calmodulin-domain protein kinase 9) C.G. S.X.
0.01 7e-1 38 Os04g0539200 9632.m04388 - - 3e+0 At5g54850 unknown protein C.G. S.X.
0.01 7e-1 38 Os04g0630000 AK060199.1 - SDA1 domain containing protein 7e-8 At4g31520 SDA1 family protein C.G. S.X.
0.01 7e-1 38 Os11g0664100 9639.m04092 - Protein kinase domain containing protein 3e-1 At4g02235 AGL51 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-6 54 Arabidopsis thaliana At1g45231 841092 - - - - - C.G. S.X.
0.01 5e-1 38 Glycine max GmaAffx.53327.1.S1_at BE612168 - - 8e-1 At3g16870 zinc finger (GATA type) family protein C.G. S.X.
0.01 4e-2 40 Hordeum vulgare Contig14870_at Contig14870 - - 9e-15 At5g51460 ATTPPA C.G. S.X.
0.11 1e-13 79 Populus trichocarpa PtpAffx.221186.1.S1_at pmrna37866 hypothetical protein - 3e-7 At1g45231 - C.G. S.X.
0.01 1e+0 36 Triticum aestivum Ta.9304.2.S1_a_at CA744381 - - 9e-2 At5g63460 SAP domain-containing protein C.G. S.X.
0.06 7e-9 61 Vitis vinifera 1615624_at CB970377 - - 3e-11 At1g45231 - C.G. S.X.
0.01 2e+0 34 Zea mays Zm.8147.1.A1_at BM073080 hypothetical protein LOC100273624 - 5e+0 At2g15830 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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