CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0390900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0390900 AK068299.1 - - 8e-5 At5g22790 RER1 (RETICULATA-RELATED 1) S.X. H.G.
0.83 95.8 Os09g0427300 AK121239.1 - Hypothetical protein 3e+0 At3g49540 unknown protein S.X. H.G.
0.67 87.2 Os10g0446800 AK099349.1 - Conserved hypothetical protein 4e-2 At5g08400 unknown protein S.X. H.G.
0.61 81.2 Os05g0547100 AK121657.1 - Conserved hypothetical protein 4e+0 At3g19220 SCO2 (SNOWY COTYLEDON 2) S.X. H.G.
0.44 58.1 Os01g0328300 AK102126.1 - Cyclin-like F-box domain containing protein 3e-2 At4g27250 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family S.X. H.G.
0.20 16.5 Os05g0148000 CB638744 - Conserved hypothetical protein 1e+0 At5g07170 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
44.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
34.9 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.6 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.6 97.5 GSM302923 seedling_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.9 97.3 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
5.8 97.0 GSM254092 Rice overexpressed OsSKIPa, biological repeat 2 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
5.5 96.8 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
5.0 96.6 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
4.4 96.2 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
4.3 96.1 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 0 678 Os11g0432800 AK107478.1 - Hypothetical protein 8e-1 At1g61795 - C.G. S.X.
0.23 2e-127 458 Os04g0524400 AK103349.1 - Conserved hypothetical protein 1e-12 At5g22790 RER1 (RETICULATA-RELATED 1) C.G. S.X.
0.04 2e-4 50 Os01g0301300 AK107188.1 - Hypothetical protein 3e+0 At4g19560 CYCT1 C.G. S.X.
0.01 6e-4 48 Os04g0346800 AK109486.1 - Pyrophosphohydrolase MazG RS21-C6 family protein 5e-1 At1g04800 glycine-rich protein C.G. S.X.
0.01 2e-3 46 Os03g0361600 9631.m02407 - - 2e-1 At4g35480 RHA3B C.G. S.X.
0.01 2e-3 46 Os04g0605500 AK120057.1 - Calcium-transporting ATPase 8, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8) 3e-30 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 8e-5 50 Arabidopsis thaliana At5g22790 832342 RER1 (RETICULATA-RELATED 1) F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope;MOBPFVA - - - C.G. S.X.
0.02 1e-1 40 Glycine max PsAffx.C205000003_at PsAffx.C205000003 - - 9e-1 At5g20270 HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1) C.G. S.X.
0.13 2e-28 127 Hordeum vulgare Contig14723_at Contig14723 - - 6e-20 At5g22790 RER1 (RETICULATA-RELATED 1) C.G. S.X.
0.02 7e-3 44 Populus trichocarpa PtpAffx.2029.1.S1_s_at BI124477 cytochrome P450 - 6e+0 At5g61610 - C.G. S.X.
0.06 3e-4 48 Triticum aestivum TaAffx.25056.1.S1_at CA707437 - - 4e+0 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1615106_at BM437755 - - 2e-30 At5g12470 unknown protein C.G. S.X.
0.16 5e-44 178 Zea mays Zm.19310.1.S1_at BM078335 hypothetical protein LOC100277077 - 1e-11 At5g22790 RER1 (RETICULATA-RELATED 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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