Gene omics information

Query gene ID	Os03g0390400
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os03g0390400	AB025187.1	-	Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein)	7e-37	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os03g0713400	AK058713.1	-	NADH-ubiquinone oxidoreductase 75 kDa subunit,mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)(Complex I-75KD) (CI-75KD) (76 kDa mitochondrial complexI subunit)	7e-92	At5g37510	EMB1467 (embryo defective 1467)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os08g0431500	AK058993.1	-	Conserved hypothetical protein	3e-20	At4g16450	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os12g0169700	AK103904.1	-	Ferripyochelin-binding protein-like	8e-16	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os08g0556600	AK121358.1	-	Conserved hypothetical protein	2e-8	At3g62790	NADH-ubiquinone oxidoreductase-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	Os05g0301700	AK070578.1	-	Cytochrome c1 (Fragment)	5e-79	At3g27240	cytochrome c1, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.9	97.3	GSM275410	Bala root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.0	96.6	GSM275409	Bala root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.3	96.1	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9	95.8	GSM275412	Azucena root tip Buckled at the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9	95.8	GSM100443	Rice Bala 0ppm Arsenate (Control) Rep1	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.8	95.7	GSM275407	Azucena root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.7	95.6	GSM100440	Rice Azucena 0ppm Arsenate (Control) Rep2	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.7	95.6	GSM275408	Bala root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.6	95.5	GSM100444	Rice Bala 0ppm Arsenate (Control) Rep2	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.6	95.5	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	5e-58	226	Os07g0621600	9635.m04300	-	Cytochrome c oxidase polypeptide VIb (Fragment)	6e-31	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	5e-58	226	Os08g0566900	AK100851.1	-	Mpv17/PMP22 family protein	2e+0	At5g56020	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.16	2e-14	81	Os04g0498200	AB047923.1	-	Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein)	3e-10	At5g57815	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	6e-5	50	Os07g0599100	9635.m04080	-	Disease resistance protein family protein	3e+0	At5g59590	UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	6e-2	40	Os08g0290600	AK065374.1	-	-	7e-8	At5g01820	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e-2	40	Os11g0521900	AK101343.1	-	CTD phosphatase-like 3	2e-10	At2g33540	CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	7e-37	155	Arabidopsis thaliana	At1g22450	838851	COX6B (CYTOCHROME C OXIDASE 6B)	subunit 6b of cytochrome c oxidase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	1e-20	101	Glycine max	Gma.5797.1.S1_at	BM523730	-	-	6e-28	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please select
0.28	1e-64	246	Hordeum vulgare	Contig3203_at	Contig3203	-	-	1e-35	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please select
0.20	5e-23	109	Populus trichocarpa	PtpAffx.31378.1.A1_s_at	CV279321	hypothetical protein	-	1e-19	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	5e-44	178	Triticum aestivum	TaAffx.85758.2.S1_at	CA625550	-	-	1e-15	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please select
0.20	9e-6	50	Vitis vinifera	1618882_at	CF518841	hypothetical protein LOC100265595	-	4e-16	At5g57815	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please select
0.38	3e-80	297	Zea mays	Zm.2825.4.A1_at	CF011665	hypothetical protein LOC100192808	-	6e-41	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
S	GO:0006123	The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
S	GO:0009060	The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
L	GO:0022900	A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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