Gene omics information

Query gene ID	Os03g0379100
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os03g0379100	AK119277.1	-	Putative methyltransferase DUF248 family protein	2e-15	At1g26850	dehydration-responsive family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.75	91.9	Os05g0519400	AK072976.1	-	N-ethylmaleimide sensitive factor NSF (Fragment)	2e-73	At4g04910	NSF (N-ethylmaleimide sensitive factor)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.68	87.5	Os04g0502200	AK066572.1	-	Conserved hypothetical protein	1e-7	At5g11040	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.62	81.5	Os03g0825700	AK067902.1	-	Defective in exine formation	6e-40	At3g09090	DEX1 (DEFECTIVE IN EXINE FORMATION 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os01g0300600	AK058273.1	-	Intradiol ring-cleavage dioxygenase domaincontaining protein	4e-11	At3g62360	carbohydrate binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os03g0216600	AK066051.1	-	Neutral alpha-glucosidase AB precursor (EC3.2.1.84) (Glucosidase II alpha subunit) (Alphaglucosidase 2). Splice isoform 3	5e-25	At5g63840	RSW3 (RADIAL SWELLING 3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	68.7	Os11g0181100	AK100605.1	-	Nonaspanin (TM9SF) family protein	2e-70	At1g10950	endomembrane protein 70, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	68.7	Os11g0174000	AK072825.1	-	Adaptin, N-terminal domain containing protein	2e-89	At4g31480	coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	68.7	Os05g0230600	AK070398.1	-	WD40-like domain containing protein	1e-7	At5g11560	catalytic	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	68.7	Os01g0600200	AU165696	-	Ser/Thr specific protein phosphatase 2A Bregulatory subunit beta isoform	4e-37	At1g17720	ATB BETA	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	97.5	GSM302921	root_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
6.5	97.2	GSM275409	Bala root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.1	97.1	GSM275408	Bala root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.7	96.9	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.1	96.6	GSM275410	Bala root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.0	96.6	GSM302919	leaf_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
4.8	96.5	GSM275414	Azucena root tip_Before the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.7	96.4	GSM275405	Azucena root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.4	96.2	GSM302918	leaf_rep1	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
4.4	96.2	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-8	61	Os10g0569300	AK072459.1	-	Putative methyltransferase DUF248 family protein	3e-10	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	3e-3	46	Os05g0472200	AK066628.1	-	Putative methyltransferase DUF248 family protein	7e-9	At2g40280	dehydration-responsive family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1e-2	44	Os06g0103900	AK111870.1	-	Putative methyltransferase DUF248 family protein	3e-10	At4g10440	dehydration-responsive family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	3e-6	56	Os01g0846600	AK070193.1	-	Putative methyltransferase DUF248 family protein	1e-28	At2g39750	dehydration-responsive family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	7e-7	57	Os01g0883900	AK119636.1	-	Putative methyltransferase DUF248 family protein	2e-12	At5g64030	dehydration-responsive protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	2e-15	85	Arabidopsis thaliana	At1g26850	839229	dehydration-responsive family protein	F:unknown;P:unknown;C:Golgi apparatus, membrane;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	1e-41	173	Glycine max	Gma.4277.2.S1_a_at	CA785837	-	-	2e-51	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.31	7e-161	567	Hordeum vulgare	Contig21277_at	Contig21277	-	-	8e-12	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.19	2e-18	95	Populus trichocarpa	PtpAffx.208132.1.S1_x_at	pmrna16160	hypothetical protein	-	3e-103	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	5e-179	628	Triticum aestivum	Ta.6370.1.S1_at	BJ308985	-	-	6e-10	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.20	1e-28	127	Vitis vinifera	1612756_at	CF207475	hypothetical protein LOC100258541	-	1e-45	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.03	1e-1	38	Zea mays	Zm.16771.1.A1_at	AI833437	hypothetical protein LOC100273067	-	6e-21	At2g34300	dehydration-responsive protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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