Gene omics information

Query gene ID	Os03g0343500
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os03g0343500	AB117995.1	-	60S ribosomal protein L22-2	2e-24	At3g05560	60S ribosomal protein L22-2 (RPL22B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os02g0814700	AK121994.1	-	60S ribosomal protein L17 [Oryza sativa (japonicacultivar-group)]	4e-78	At1g04480	60S ribosomal protein L23 (RPL23A)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os01g0205500	AK067763.1	-	60S ribosomal protein L11-2 (L16). Splice isoform2	1e-109	At4g18730	RPL16B	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os03g0807800	AK064984.1	-	40S ribosomal protein S2	2e-16	At3g57490	40S ribosomal protein S2 (RPS2D)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os02g0591700	AK072777.1	-	Ribosomal protein L6 (Fragment)	9e-6	At1g74060	60S ribosomal protein L6 (RPL6B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os01g0815800	AK058612.1	-	-	2e-31	At3g53020	STV1 (SHORT VALVE1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	96.6	GSM275411	Azucena root tip_Buckled at the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.7	96.4	GSM275405	Azucena root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.3	96.1	GSM275408	Bala root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.1	96.0	GSM275414	Azucena root tip_Before the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9	95.8	GSM275406	Azucena root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9	95.8	GSM275407	Azucena root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.8	95.7	GSM275412	Azucena root tip Buckled at the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.5	95.3	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.3	95.1	GSM275415	Azucena root tip_Before the wax layer_Rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.3	95.1	GSM100441	Rice Azucena 1ppm Arsenate Rep1	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Os10g0133100	AK071096.1	-	Cyclin-like F-box domain containing protein	7e-1	At5g01880	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	8e-1	36	Os03g0607800	AK102418.1	-	Conserved hypothetical protein	2e+0	At4g39840	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	8e-1	36	Os06g0252800	AK070507.1	-	Estrogen sulfotransferase (EC 2.8.2.4)(Sulfotransferase, estrogen- preferring) (ST1E3)	6e-1	At2g27580	zinc finger (AN1-like) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e-1	36	Os06g0218300	AK108491.1	-	Conserved hypothetical protein	9e-4	At3g13227	serine-rich protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e-1	36	Os07g0557500	AK101830.1	-	Zn-finger, RING domain containing protein	8e-2	At1g55160	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e-1	36	Os08g0376300	AK072348.1	-	Protein kinase domain containing protein	4e-7	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	2e-24	113	Arabidopsis thaliana	At3g05560	819722	60S ribosomal protein L22-2 (RPL22B)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	2e-19	97	Glycine max	GmaAffx.92770.1.S1_at	CF808495	-	-	3e-41	At5g27770	60S ribosomal protein L22 (RPL22C)	C.G.	S.X.	Please select
0.53	7e-146	515	Hordeum vulgare	Contig2310_at	Contig2310	-	-	4e-22	At3g05560	60S ribosomal protein L22-2 (RPL22B)	C.G.	S.X.	Please select
0.28	3e-15	83	Populus trichocarpa	Ptp.5658.1.S1_at	CX182584	-	-	1e-28	At3g05560	60S ribosomal protein L22-2 (RPL22B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	3e-88	325	Triticum aestivum	Ta.28366.2.S1_x_at	BJ296091	-	-	3e-26	At3g05560	60S ribosomal protein L22-2 (RPL22B)	C.G.	S.X.	Please select
0.35	7e-31	133	Vitis vinifera	1608604_at	BQ796866	hypothetical protein LOC100260136	-	7e-24	At3g05560	60S ribosomal protein L22-2 (RPL22B)	C.G.	S.X.	Please select
0.36	2e-112	404	Zea mays	Zm.14435.2.A1_at	CF633613	hypothetical protein LOC100192778	-	4e-29	At3g05560	60S ribosomal protein L22-2 (RPL22B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006412	The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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