CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0341300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os03g0341300 9631.m02223 - MtN3 and saliva related transmembrane proteinfamily protein 4e-2 At5g13170 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) S.X. H.G.
0.80 94.6 Os06g0147000 AK120978.1 - Conserved hypothetical protein 3e-1 At4g28830 methyltransferase/ nucleic acid binding S.X. H.G.
0.67 87.2 Os05g0206000 AK107740.1 - Hypothetical protein 3e-1 At2g04520 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative S.X. H.G.
0.67 87.2 Os01g0284900 AK106618.1 - Conserved hypothetical protein 8e-1 At2g37000 TCP family transcription factor, putative S.X. H.G.
0.50 68.0 Os03g0386000 AK072984.1 - WD domain protein-like 3e-5 At1g78070 - S.X. H.G.
0.44 58.1 Os01g0138500 AK073435.1 - Protein of unknown function DUF789 family protein 7e-1 At5g49220 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
168.7 100.0 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
28.3 99.6 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
24.5 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.4 97.9 GSM278846 WuYun3-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.2 97.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.2 97.1 GSM281585 Rice Zhonghua11, biological rep3 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
6.1 97.1 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
5.2 96.7 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
5.2 96.7 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
5.2 96.7 GSM281584 Rice Zhonghua11, biological rep2 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-7 57 Os03g0347500 AK109114.1 - MtN3-like protein 5e-2 At5g13170 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) C.G. S.X.
0.06 3e-7 57 Os02g0513100 AK103266.1 - NEC1 1e-5 At4g25010 nodulin MtN3 family protein C.G. S.X.
0.05 2e-11 71 Os01g0709100 AK120802.1 - Conserved hypothetical protein 1e+0 At1g02840 SR1 C.G. S.X.
0.03 1e-6 56 Os03g0275300 CB647801 - Zn-finger, RING domain containing protein 4e-1 At3g30220 unknown protein C.G. S.X.
0.03 8e-5 50 Os06g0700300 AK099967.1 - Hypothetical protein 7e+0 At5g62770 unknown protein C.G. S.X.
0.02 2e-5 52 Os07g0484300 CB662468 - Zn-finger, RING domain containing protein 5e+0 At5g08139 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 8e-5 50 Os01g0541800 AK066226.1 - MtN3 and saliva related transmembrane proteinfamily protein 3e+0 At5g23660 MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) C.G. S.X.
0.02 3e-4 48 Os03g0816000 9631.m05921 - Conserved hypothetical protein 9e-6 At5g05230 ubiquitin-protein ligase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 40 Arabidopsis thaliana At5g13170 831156 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB - - - C.G. S.X.
0.03 3e-3 44 Glycine max PsAffx.CL87Contig2_s_at PsAffx.CL87Contig2 - - 1e+0 At1g60010 unknown protein C.G. S.X.
0.13 4e-22 105 Hordeum vulgare Contig11511_at Contig11511 - - 8e-3 At5g46030 unknown protein C.G. S.X.
0.03 3e-3 44 Populus trichocarpa PtpAffx.43837.1.A1_s_at CV256587 hypothetical protein - 3e-6 At4g24026 unknown protein C.G. S.X.
0.10 3e-24 113 Triticum aestivum TaAffx.12181.1.S1_at BJ284081 - - 8e-3 At5g46030 unknown protein C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1616748_at CF215206 hypothetical protein LOC100246856 - 2e-37 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) C.G. S.X.
0.55 2e-76 286 Zea mays Zm.17949.1.A1_at CF627845 - - 2e-2 At5g13170 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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