CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0339300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0339300 AK061545.1 - Peroxidase (EC 1.11.1.7) 5e-1 At1g14550 anionic peroxidase, putative S.X. H.G.
0.71 89.6 Os03g0658800 AK065238.1 - Cytochrome P450 family protein 2e-5 At4g15310 CYP702A3 S.X. H.G.
0.53 71.3 Os05g0456300 AK068616.1 - Aldose reductase 3e-6 At2g37790 aldo/keto reductase family protein S.X. H.G.
0.43 55.4 Os02g0647900 AK060824.1 - Aldehyde dehydrogenase domain containing protein 3e-1 At5g48690 - S.X. H.G.
0.40 51.1 Os04g0644400 AK061322.1 - Proline-rich-like protein 6e-1 At3g55880 unknown protein S.X. H.G.
0.38 46.9 Os02g0308800 AK104533.1 - Beta-Ig-H3/fasciclin domain containing protein 2e+0 At5g43280 ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.5 98.7 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
14.1 98.5 GSM387561 Transgenic line 22, biological rep. 3 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
13.9 98.5 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
13.7 98.5 GSM387564 Wild-type, biological rep. 3 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
12.9 98.4 GSM387557 Transgenic line 4, biological rep. 2 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
12.2 98.3 GSM387563 Wild-type, biological rep. 2 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
12.1 98.3 GSM387562 Wild-type, biological rep. 1 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
9.1 97.9 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
8.9 97.8 GSM387559 Transgenic line 22, biological rep. 1 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
8.9 97.8 GSM281585 Rice Zhonghua11, biological rep3 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 8e-17 89 Os07g0677300 D16442.1 - Peroxidase 2e-4 At3g50990 electron carrier/ heme binding / peroxidase C.G. S.X.
0.21 3e-25 117 Os07g0677500 AF247700.2 - Peroxidase POC1 2e-4 At5g05340 peroxidase, putative C.G. S.X.
0.19 1e-21 105 Os07g0677100 AF014468.1 - Peroxidase 2e-4 At5g05340 peroxidase, putative C.G. S.X.
0.18 2e-14 81 Os07g0677200 AF014467.1 - Peroxidase 3e-6 At5g05340 peroxidase, putative C.G. S.X.
0.10 3e-16 87 Os07g0676900 AK072862.1 - Peroxidase (EC 1.11.1.7) 6e-4 At5g05340 peroxidase, putative C.G. S.X.
0.09 8e-14 79 Os07g0677400 AF014469.1 - Peroxidase 7e-4 At3g50990 electron carrier/ heme binding / peroxidase C.G. S.X.
0.06 8e-14 79 Os04g0651000 AK108994.1 - Peroxidase 3e-3 At5g58400 peroxidase, putative C.G. S.X.
0.05 2e-14 81 Os03g0235000 D14482.1 - Peroxidase (EC 1.11.1.7) 7e-4 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
0.05 3e-13 77 Os01g0543100 AK105363.1 - Peroxidase 72 precursor (EC 1.11.1.7) (AtperoxP72) (PRXR8) (ATP6a) 5e-5 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-1 36 Arabidopsis thaliana At1g14550 838017 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM - - - C.G. S.X.
0.03 7e-4 46 Glycine max GmaAffx.18180.2.S1_at BE803396 - - 4e-1 At5g05340 peroxidase, putative C.G. S.X.
0.23 1e-24 113 Hordeum vulgare Contig2112_at Contig2112 - - 1e-8 At1g44970 peroxidase, putative C.G. S.X.
0.04 2e-1 38 Populus trichocarpa PtpAffx.206163.1.S1_at pmrna12232 hypothetical protein - 5e-13 At2g41480 electron carrier/ heme binding / peroxidase C.G. S.X.
0.23 1e-14 81 Triticum aestivum Ta.24106.1.S1_x_at CA665159 peroxidase - 1e+0 At3g32980 peroxidase 32 (PER32) (P32) (PRXR3) C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1620940_at CF201899.1 - - 2e+1 At5g66990 RWP-RK domain-containing protein C.G. S.X.
0.27 2e-35 149 Zea mays Zm.2707.1.S1_at BG842199 - - 2e-1 At5g05340 peroxidase, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage