CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0337800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.85 96.1 Os03g0337800 AK102721.1 - 60S ribosomal protein L19 (Fragment) 2e-43 At1g02780 emb2386 (embryo defective 2386) S.X. H.G.
0.80 94.6 Os12g0508300 AK059123.1 - Conserved hypothetical protein 2e-20 At4g33865 40S ribosomal protein S29 (RPS29C) S.X. H.G.
0.79 93.6 Os02g0284600 AK121593.1 - 60S ribosomal protein L27 3e-11 At4g15000 60S ribosomal protein L27 (RPL27C) S.X. H.G.
0.76 92.2 Os09g0485900 AK064936.1 - 60S ribosomal protein L9 (Gibberellin-regulatedprotein GA) 5e-23 At1g33140 PGY2 (PIGGYBACK2) S.X. H.G.
0.75 91.9 Os01g0834500 AK058829.1 - 40S ribosomal protein S23 1e-93 At5g02960 40S ribosomal protein S23 (RPS23B) S.X. H.G.
0.73 91.1 Os05g0160200 L31941.1 - The start codon is not identified. 6e-74 At2g47110 UBQ6 S.X. H.G.
0.71 89.6 Os02g0797200 AK120800.1 - 60S ribosomal protein L39 6e-11 At3g02190 60S ribosomal protein L39 (RPL39B) S.X. H.G.
0.70 88.4 Os08g0116500 AK060433.1 - 60S acidic ribosomal protein P1 (L12) 1e-3 At2g27720 60S acidic ribosomal protein P2 (RPP2A) S.X. H.G.
0.69 87.9 Os07g0662500 D12821.1 - Elongation factor 1-beta' (EF-1-beta') 8e-25 At2g18110 elongation factor 1-beta, putative / EF-1-beta, putative S.X. H.G.
0.65 83.8 Os05g0459900 AK111268.1 - 60S ribosomal protein L36-1 4e-1 At4g31580 SRZ-22 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.0 94.6 GSM67052 FL478 control replicate 1 GSE3053 Rice salt expression
2.9 94.5 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
2.9 94.5 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
2.9 94.5 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
2.8 94.3 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.7 94.1 GSM261998 IAC165, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.7 94.1 GSM99868 TCHW P11_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
2.7 94.1 GSM262003 IAC165, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.6 93.8 GSM99863 TCHW P6_m103 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
2.6 93.8 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-2 40 Os09g0437900 AK107833.1 - Adrenodoxin 9e-24 At4g05450 adrenodoxin-like ferredoxin 2 C.G. S.X.
0.02 1e+0 36 Os08g0501633 9636.m03962 - - 3e-1 At3g53040 late embryogenesis abundant protein, putative / LEA protein, putative C.G. S.X.
0.01 3e-1 38 Os01g0199350 NM_188270.1 - - 6e-2 At4g28840 unknown protein C.G. S.X.
0.01 3e-1 38 Os07g0531700 AK071504.1 - Conserved hypothetical protein 5e-3 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
0.01 3e-1 38 Os08g0519700 AK073429.1 - Protein of unknown function DUF630 domaincontaining protein 1e-4 At2g38330 MATE efflux family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 2e-43 176 Arabidopsis thaliana At1g02780 839407 emb2386 (embryo defective 2386) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:in 6 components;MAOFP - - - C.G. S.X.
0.42 3e-62 240 Glycine max GmaAffx.91075.1.S1_at CF806800 - - 2e-34 At3g16780 60S ribosomal protein L19 (RPL19B) C.G. S.X.
0.58 0 743 Hordeum vulgare Contig1598_at Contig1598 - - 6e-56 At3g16780 60S ribosomal protein L19 (RPL19B) C.G. S.X.
0.43 3e-77 289 Populus trichocarpa Ptp.79.1.S1_at CF234576 hypothetical protein - 6e-62 At3g16780 60S ribosomal protein L19 (RPL19B) C.G. S.X.
0.49 7e-124 444 Triticum aestivum Ta.15629.1.S1_at CA485906 - - 7e-34 At1g02780 emb2386 (embryo defective 2386) C.G. S.X.
0.26 4e-70 264 Vitis vinifera 1621492_at CB978828 similar to 60S ribosomal protein L19 - 4e-66 At3g16780 60S ribosomal protein L19 (RPL19B) C.G. S.X.
0.47 0 656 Zea mays Zm.14283.2.A1_at CF635325 60S ribosomal protein L19-3 - 1e-42 At1g02780 emb2386 (embryo defective 2386) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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