CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0323500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.68 87.5 Os03g0323500 AK066439.1 - Arf GTPase activating protein family protein 2e+0 At5g09450 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.63 82.7 Os03g0266800 AK100780.1 - Protein kinase domain containing protein 7e-27 At1g31420 FEI1 (FEI 1) S.X. H.G.
0.60 79.7 Os04g0683600 AK065557.1 - Receptor kinase-like protein 3e-7 At1g63430 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.56 76.3 Os07g0681700 AK103213.1 - Glycosyl transferase, family 8 protein 9e-2 At2g38650 GAUT7 (GALACTURONOSYLTRANSFERASE 7) S.X. H.G.
0.53 71.3 Os01g0969100 AK070623.1 - Conserved hypothetical protein 9e-75 At1g08200 AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2) S.X. H.G.
0.50 68.0 Os02g0739900 CA763386 - Arabidopsis thaliana protein of unknown functionDUF813 family protein 2e+0 At4g03150 unknown protein S.X. H.G.
0.50 68.0 Os05g0543100 AK065138.1 - Clathrin adaptor complex, medium chain familyprotein 3e-65 At1g60780 HAP13 (HAPLESS 13) S.X. H.G.
0.50 68.0 Os01g0660300 AK106457.1 - Pyruvate kinase isozyme G, chloroplast precursor(EC 2.7.1.40) 8e-50 At5g52920 PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1) S.X. H.G.
0.50 68.0 Os08g0230200 AK069639.1 - - 5e-3 At1g16860 merozoite surface protein-related S.X. H.G.
0.49 64.4 Os06g0598800 AK101377.1 - Fatty acid elongase 1-like protein 1e-28 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.8 99.0 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
13.7 98.5 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
10.1 98.0 GSM99859 TCHW P2_m103 control, biological rep2 GSE4438 Expression data from rice under salinity stress
9.5 97.9 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
9.1 97.9 GSM99867 TCHW P10_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
7.9 97.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.6 97.5 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
7.1 97.4 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
7.0 97.4 GSM302919 leaf_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.1 97.1 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-5 52 Os02g0208900 AK070031.1 - ZIGA2 protein (Fragment) 6e-3 At4g32630 ARF GTPase activator/ zinc ion binding C.G. S.X.
0.01 3e-3 46 Os10g0439800 9638.m02609 - Cytochrome P450 family protein 1e-2 At3g26180 CYP71B20 C.G. S.X.
0.01 1e-2 44 Os02g0241100 9630.m01346 - Protein kinase domain containing protein 3e-1 At4g29460 phospholipase A2 gamma, secretory low molecular weight C.G. S.X.
0.01 1e-2 44 Os03g0852500 AK068948.1 - Conserved hypothetical protein 1e-1 At4g29240 leucine-rich repeat family protein / extensin family protein C.G. S.X.
0.01 1e-2 44 Os08g0193600 9636.m00896 - Cyclin-like F-box domain containing protein 1e-2 At2g05440 glycine-rich protein C.G. S.X.
0.01 1e-2 44 Os08g0405700 AK108256.1 - Copper chaperone homolog CCH 1e-4 At2g28660 copper-binding family protein C.G. S.X.
0.01 1e-2 44 Os12g0613000 AK065163.1 - CCAAT-binding transcription factor, subunit Bfamily protein 2e-1 At3g20910 NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Arabidopsis thaliana At5g09450 830804 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF - - - C.G. S.X.
0.01 8e-3 44 Glycine max Gma.12494.2.S1_at BQ786664 - - 3e-1 At2g29950 ELF4-L1 (ELF4-Like 1) C.G. S.X.
0.01 4e-2 40 Hordeum vulgare Contig12118_at Contig12118 - - 3e-1 At1g34419 unknown protein C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.224082.1.S1_x_at pmrna42319 hypothetical protein - 1e-2 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) C.G. S.X.
0.08 3e-20 101 Triticum aestivum TaAffx.64270.1.A1_at BJ306972 - - 4e+0 At5g55508 unknown protein C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1610042_at CF403823 hypothetical protein LOC100261474 - 4e+0 At5g51400 unknown protein C.G. S.X.
0.01 3e-3 44 Zea mays Zm.19170.1.S1_at CO532790 GPI-anchored protein - 4e-2 At5g22650 HD2B (HISTONE DEACETYLASE 2B) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage