CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0314500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.38 46.9 Os03g0314500 AK065474.1 - Quinonprotein alcohol dehydrogenase-like domaincontaining protein 1e+0 At1g13860 dehydration-responsive protein-related S.X. H.G.
0.83 95.8 Os07g0539100 AK067173.1 - Glycoside hydrolase, family 17 protein 2e-2 At2g42930 glycosyl hydrolase family protein 17 S.X. H.G.
0.50 68.0 Os08g0189200 AF032972.1 - Oxalate oxidase (Fragment) 3e-2 At5g39110 germin-like protein, putative S.X. H.G.
0.40 51.1 Os08g0189300 AF032971.1 - Oxalate oxidase (Fragment) 3e-2 At5g26700 germin-like protein, putative S.X. H.G.
0.08 4.2 Os06g0547400 AK121950.1 - Peroxidase P7 (EC 1.11.1.7) (TP7) 2e-4 At5g05340 peroxidase, putative S.X. H.G.
0.05 2.5 Os07g0124900 AY339373.1 - PR1a protein 6e+0 At5g18210 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
62.8 99.9 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
28.8 99.6 GSM431935 Shoot- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
26.9 99.6 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
26.1 99.5 GSM431936 Shoot- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
17.9 98.9 GSM431934 Shoot- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.4 98.6 GSM431933 Shoot- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
13.9 98.5 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
10.7 98.1 GSM431937 Shoot- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.8 98.0 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
8.3 97.7 GSM149409 Rice Azucena 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 4e-67 258 Os03g0403400 AK111515.1 - TolB, C-terminal domain containing protein 3e-1 At1g49110 unknown protein C.G. S.X.
0.21 1e-11 73 Os12g0431300 AK110931.1 - Quinoprotein amine dehydrogenase, beta chain-likedomain containing protein 3e-1 At1g49110 unknown protein C.G. S.X.
0.01 1e-2 44 Os03g0840200 AK067797.1 - TolB, C-terminal domain containing protein 1e-3 At1g21680 - C.G. S.X.
0.01 2e-1 40 Os01g0885800 9629.m06571 - - 2e+0 At5g65300 unknown protein C.G. S.X.
0.01 2e-1 40 Os04g0662200 AK107934.1 - Auxin responsive SAUR protein family protein 2e+0 At1g19840 auxin-responsive family protein C.G. S.X.
0.01 2e-1 40 Os08g0109300 AK066688.1 - Adenylate kinase, chloroplast (EC 2.7.4.3)(ATP-AMP transphosphorylase) 8e-10 At5g47840 AMK2 (Adenosine monophosphate kinase) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Arabidopsis thaliana At1g13860 837945 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:plasma membrane;PBOAF - - - C.G. S.X.
0.01 4e-1 38 Glycine max GmaAffx.14915.1.S1_at BE057713 - - 3e-5 At1g66260 RNA and export factor-binding protein, putative C.G. S.X.
0.24 7e-13 75 Hordeum vulgare Contig6005_x_at Contig6005 - - 3e-1 At1g20130 hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall C.G. S.X.
0.01 1e-1 40 Populus trichocarpa PtpAffx.219871.1.S1_at pmrna36025 hypothetical protein - 3e+1 At5g03944 unknown protein C.G. S.X.
0.21 4e-13 77 Triticum aestivum Ta.14459.1.S1_x_at BJ218617 - - 5e+0 At2g21070 FIO1 (FIONA1) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1618097_at BQ792545 hypothetical protein LOC100265646 - 2e-33 At5g59690 histone H4 C.G. S.X.
0.01 1e-1 38 Zea mays Zm.1353.1.A1_at AW862733 PCO069699 protein - 2e+0 At5g13900 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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