CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0309400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.95 99.6 Os03g0309400 AY343494.2 - Pectinesterase family protein 2e-1 At3g17060 pectinesterase family protein S.X. H.G.
0.69 87.9 Os03g0388800 9631.m02672 - Alpha/beta hydrolase family protein 3e-2 At5g21950 hydrolase, alpha/beta fold family protein S.X. H.G.
0.68 87.5 Os07g0281200 AK121421.1 - Conserved hypothetical protein 1e+0 At5g57345 unknown protein S.X. H.G.
0.65 83.8 Os09g0297800 AK064738.1 - Conserved hypothetical protein 4e-1 At4g28280 unknown protein S.X. H.G.
0.62 81.5 Os04g0456100 AK070866.1 - Hypothetical protein 6e+0 At5g60800 heavy-metal-associated domain-containing protein S.X. H.G.
0.61 81.2 Os04g0558900 AK100861.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 6e-3 At5g59810 SBT5.4 S.X. H.G.
0.60 79.7 Os01g0808400 AK112112.1 - Calcium-dependent protein kinase (Fragment) 2e-8 At5g19360 CPK34 S.X. H.G.
0.58 77.0 Os02g0559300 AK100088.1 - Protein kinase domain containing protein 1e-4 At1g71530 protein kinase family protein S.X. H.G.
0.58 77.0 Os04g0585900 AK064763.1 - Protein of unknown function DUF581 family protein 2e-6 At4g17670 senescence-associated protein-related S.X. H.G.
0.58 77.0 Os01g0763800 AK069980.1 - Protein of unknown function DUF620 family protein 2e-4 At1g75160 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
248.6 100.0 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
16.9 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-6 54 Os01g0300100 9629.m01898 - - 1e-4 At5g19730 pectinesterase family protein C.G. S.X.
0.05 2e-2 42 Os07g0655600 AK119935.1 - Pectinesterase family protein 2e+0 At4g11660 AT-HSFB2B C.G. S.X.
0.04 6e-3 44 Os09g0571100 AK106869.1 - Pectinesterase family protein 4e-2 At3g17060 pectinesterase family protein C.G. S.X.
0.02 9e-2 40 Os01g0312500 AK105998.1 - Pectin methylesterase isoform alpha (EC 3.1.1.11)(Fragment) 2e-2 At3g14310 ATPME3 C.G. S.X.
0.01 9e-2 40 Os03g0300500 AK070513.1 - Pectinesterase (EC 3.1.1.11) (Fragment) 1e+0 At3g49580 LSU1 (RESPONSE TO LOW SULFUR 1) C.G. S.X.
0.01 9e-2 40 Os06g0154500 AK111691.1 - Mitogen-activated protein kinase (MAP kinase 6) 5e-36 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) C.G. S.X.
0.01 9e-2 40 Os08g0548300 AK073266.1 - Zn-finger, RING domain containing protein 7e-1 At1g21770 - C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 38 Arabidopsis thaliana At3g17060 820963 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM - - - C.G. S.X.
0.02 4e+0 34 Glycine max PsAffx.psMY005iE01r_s_at PsAffx.psMY005iE01r - - 1e-3 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) C.G. S.X.
0.03 1e-3 44 Hordeum vulgare HI12M06r_at HI12M06r - - 3e-19 At5g19730 pectinesterase family protein C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.218614.1.S1_at pmrna34296 hypothetical protein - 2e-1 At4g31360 selenium binding C.G. S.X.
0.03 1e-2 42 Triticum aestivum TaAffx.36894.2.S1_at BJ303490 - - 2e-2 At5g47500 pectinesterase family protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1615639_a_at BQ795365 hypothetical protein LOC100266227 - 2e-14 At2g44060 late embryogenesis abundant family protein / LEA family protein C.G. S.X.
0.56 0 771 Zea mays Zm.3806.1.S1_at CF009077 hypothetical protein LOC100280019 - 4e-2 At3g17060 pectinesterase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage