CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0308200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os03g0308200 AK062228.1 - ARM repeat fold domain containing protein 5e-7 At5g26850 - S.X. H.G.
0.75 91.9 Os05g0555100 AJ272423.1 - Protein phosphatase 2A B'kappa subunit 1e+0 At5g03470 ATB' ALPHA S.X. H.G.
0.67 87.2 Os05g0526400 CR284436 - Reticulon family protein 4e+0 At3g10260 reticulon family protein S.X. H.G.
0.67 87.2 Os06g0308300 AK102553.1 - 65kD microtubule associated protein 3e-29 At5g55230 ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1) S.X. H.G.
0.57 77.0 Os02g0767000 AK122109.1 - Remorin, C-terminal region domain containingprotein 1e-9 At4g36970 remorin family protein S.X. H.G.
0.55 73.7 Os12g0613700 AK121703.1 - Transcriptional factor B3 family protein 9e-52 At5g37020 ARF8 (AUXIN RESPONSE FACTOR 8) S.X. H.G.
0.40 51.1 Os07g0568000 AK072783.1 - Conserved hypothetical protein 2e-2 At1g10180 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.8 98.9 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
14.2 98.5 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
13.7 98.5 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
13.3 98.4 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
12.5 98.3 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
12.3 98.3 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.7 98.2 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.6 98.2 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.6 98.2 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
10.1 98.0 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 40 Os01g0125700 AK121965.1 - Conserved hypothetical protein 3e-15 At5g17460 unknown protein C.G. S.X.
0.01 2e-1 40 Os11g0619800 AK107437.1 - BTB/POZ domain containing protein 3e+0 At3g55790 unknown protein C.G. S.X.
0.01 9e-1 38 Os02g0679101 9630.m04421 - - 1e+0 At5g54580 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.01 9e-1 38 Os03g0166800 BQ908297 - Endonuclease/exonuclease/phosphatase familyprotein 3e-1 At1g15220 CCMH C.G. S.X.
0.01 4e+0 36 Os08g0308800 9636.m02120 - Hypothetical protein 6e-15 At3g46630 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-7 57 Arabidopsis thaliana At5g26850 832743 - F:unknown;P:biological_process unknown;C:chloroplast;MPFO - - - C.G. S.X.
0.01 6e-1 38 Glycine max PsAffx.CL1363Contig1_at PsAffx.CL1363Contig1 - - 2e-23 At5g20570 RBX1 (RING-BOX 1) C.G. S.X.
0.43 0 930 Hordeum vulgare Contig7613_at Contig7613 - - 4e+0 At5g56540 AGP14 (ARABINOGALACTAN PROTEIN 14) C.G. S.X.
0.05 2e-10 69 Populus trichocarpa PtpAffx.210853.1.S1_at pmrna21314 hypothetical protein - 8e-12 At5g26850 - C.G. S.X.
0.09 4e-23 111 Triticum aestivum TaAffx.81970.1.S1_x_at CA679612 - - 4e+0 At1g68700 unknown protein C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1618318_at CF609544 hypothetical protein LOC100266352 - 2e-12 At1g22240 APUM8 (Arabidopsis Pumilio 8) C.G. S.X.
0.47 4e-101 369 Zea mays Zm.4030.1.A1_at BM350062 - - 1e+0 At1g17210 zinc ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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