Gene omics information

Query gene ID	Os03g0308100
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	68.0	Os03g0308100	AK105977.1	-	Peptidase S14, ClpP family protein	5e-60	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	Os01g0507900	AK102473.1	-	NClpP3 (ATP-dependent Clp protease proteolyticsubunit ClpP3)	3e+0	At4g35820	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.65	83.8	Os02g0833400	AK063696.1	-	Conserved hypothetical protein	9e-16	At1g63610	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os07g0568500	AK109391.2	-	Conserved hypothetical protein	7e-1	At2g42380	bZIP transcription factor family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os07g0485400	CB668567	-	Asparaginyl-tRNA synthetase,chloroplast/mitochondrial precursor (EC 6.1.1.22)(Asparagine--tRNA ligase) (AsnRS)	1e-25	At4g17300	NS1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os03g0209600	AK068726.1	-	MEtRS (EC 6.1.1.10)	3e-10	At3g55400	OVA1 (OVULE ABORTION 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	78.0	Os12g0485000	AK099965.1	-	Peptidase M22, glycoprotease domain containingprotein	6e-5	At2g45270	glycoprotease M22 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	78.0	Os03g0651000	AK120336.1	-	Glu-tRNAGln amidotransferase, C subunit familyprotein	4e-1	At2g40650	pre-mRNA splicing factor PRP38 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os11g0153600	AK065028.1	-	Signal peptide binding (SRP54) M-domain containingprotein	1e-22	At5g03940	CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.54	71.9	Os02g0623500	AK066521.1	-	Lysyl-tRNA synthetase, class-2 family protein	4e-28	At3g13490	OVA5 (OVULE ABORTION 5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	97.8	GSM207562	Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
7.8	97.6	GSM357135	14-day-old seedling, heat shock, rep 1	GSE14275	Expression data for heat shock in rice seedlings
7.5	97.5	GSM357136	14-day-old seedling, heat shock, rep 2	GSE14275	Expression data for heat shock in rice seedlings
7.5	97.5	GSM207559	Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
7.4	97.5	GSM357137	14-day-old seedling, heat shock, rep 3	GSE14275	Expression data for heat shock in rice seedlings
6.6	97.3	GSM207560	Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.4	97.2	GSM207564	Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.3	97.2	GSM207558	Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.5	96.8	GSM254095	Rice suppressed OsSKIPa, biological repeat 3	GSE10054	Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
5.5	96.8	GSM207563	Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-3	44	Os02g0138300	9630.m00370	-	-	3e-1	At2g30560	glycine-rich protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e-5	50	Os06g0663000	9634.m04389	-	-	4e+0	At3g08680	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-3	46	Os08g0553800	AK065711.1	-	Isoflavone reductase family protein	1e-25	At4g35250	vestitone reductase-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-3	44	Os02g0793400	AK109835.1	-	-	7e-1	At4g16240	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	5e-60	232	Arabidopsis thaliana	At1g02560	839433	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	3e-53	210	Glycine max	Gma.1376.1.S1_at	CD403410	-	-	8e-133	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please select
0.60	0	809	Hordeum vulgare	Contig5003_at	Contig5003	-	-	5e-54	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please select
0.35	1e-67	258	Populus trichocarpa	PtpAffx.202380.1.S1_s_at	pmrna4781	hypothetical protein	-	1e-159	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	0	698	Triticum aestivum	Ta.494.1.S1_at	CK155824	-	-	5e-30	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please select
0.37	2e-62	238	Vitis vinifera	1613223_at	CB341689	hypothetical protein LOC100246849	-	2e-121	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please select
0.61	0	720	Zea mays	Zm.5146.1.S1_a_at	CF057534	hypothetical protein LOC100194286	-	2e-68	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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