CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0306700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0306700 AK109929.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e-1 At2g27250 CLV3 (CLAVATA3) S.X. H.G.
0.67 87.2 Os06g0500700 9634.m02934 - Cytochrome P450 family protein 1e-2 At3g26300 CYP71B34 S.X. H.G.
0.57 77.0 Os11g0126800 AK059453.1 - Hypothetical protein 9e-2 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) S.X. H.G.
0.56 76.3 Os04g0189012 9632.m00980 - - 2e+0 At5g13910 LEP (LEAFY PETIOLE) S.X. H.G.
0.50 68.0 Os07g0643800 AK103858.1 - Plant disease resistance response protein familyprotein 1e-1 At1g01730 unknown protein S.X. H.G.
0.23 21.2 Os01g0297200 AK109883.1 - AAA ATPase, central region domain containingprotein 6e-5 At4g25835 AAA-type ATPase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.4 99.6 GSM262016 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
26.0 99.5 GSM262014 Nipponbare, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
23.2 99.3 GSM262018 Nipponbare, 11 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
22.6 99.3 GSM262012 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
22.1 99.3 GSM262006 IAC165, 11 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
21.9 99.3 GSM262010 Nipponbare, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
20.8 99.2 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
20.6 99.1 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
20.0 99.1 GSM262004 IAC165, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
19.6 99.1 GSM262015 Nipponbare, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Os03g0185800 AK108006.1 - Conserved hypothetical protein 2e+0 At5g02000 unknown protein C.G. S.X.
0.03 6e-3 44 Os08g0113700 AK070327.1 - Conserved hypothetical protein 4e-3 At5g27440 unknown protein C.G. S.X.
0.02 2e-5 52 Os04g0412800 AK060508.1 - Type I collagen alpha 1 6e-2 At2g36080 DNA-binding protein, putative C.G. S.X.
0.01 6e-3 44 Os07g0259300 NM_186926.1 - Conserved hypothetical protein 3e-2 At4g11430 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At2g27250 817267 CLV3 (CLAVATA3) One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis. Belongs to a large gene family called CLE for CLAVATA3/ESR-related. Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone. The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide. The functional form of CLV3 (MCLV3) is a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline. CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein. It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function. - - - C.G. S.X.
0.03 1e+0 36 Glycine max PsAffx.CL3Contig13_at PsAffx.CL3Contig13 - - 1e+0 At5g54460 wound-responsive protein-related C.G. S.X.
0.02 9e-2 38 Hordeum vulgare Contig11487_at Contig11487 - - 2e+0 At5g24920 AtGDU5 (Arabidopsis thaliana GLUTAMINE DUMPER 5) C.G. S.X.
0.02 6e-2 40 Populus trichocarpa PtpAffx.222832.1.S1_at pmrna40507 hypothetical protein - 5e+0 At5g66000 unknown protein C.G. S.X.
0.03 1e-2 42 Triticum aestivum Ta.20465.2.S1_x_at CA713681 - - 1e+1 At5g15350 plastocyanin-like domain-containing protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1622271_at BM437605 - - 1e-7 At5g11090 serine-rich protein-related C.G. S.X.
0.02 8e-2 38 Zea mays Zm.12605.1.S1_at BU050000 hypothetical protein LOC100274683 - 1e+1 At5g14200 3-isopropylmalate dehydrogenase, chloroplast, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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