CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0302700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os03g0302700 AK112010.1 - Zn-finger, RING domain containing protein 1e-1 At3g05870 APC11 S.X. H.G.
0.36 44.0 Os01g0588500 AK103037.1 - Protein kinase APK1A (EC 2.7.1.-) 3e-60 At3g01300 protein kinase, putative S.X. H.G.
0.33 38.8 Os04g0499200 AK069440.1 - Enhancer of rudimentary family protein 2e-1 At5g35695 unknown protein S.X. H.G.
0.12 7.2 Os06g0233200 AK108060.1 - RING zinc finger protein-like 6e-5 At5g40250 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.10 5.7 Os09g0361700 AK063109.1 - Protein of unknown function UPF0203 family protein 3e-3 At3g22070 proline-rich family protein S.X. H.G.
0.04 2.0 Os10g0465900 AK110879.1 - Conserved hypothetical protein 1e+1 At5g08565 positive transcription elongation factor/ zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.0 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-3 44 Os01g0872100 AK099405.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 1e-2 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) C.G. S.X.
0.02 1e-2 42 Os04g0674000 AK119671.1 - Conserved hypothetical protein 7e-1 At4g16240 unknown protein C.G. S.X.
0.02 1e-2 42 Os05g0137500 9633.m00395 - - 1e-8 At1g68150 WRKY9 C.G. S.X.
0.01 3e-4 48 Os04g0684500 AK066014.1 - Membrane-associated salt-inducible protein-like 8e-6 At5g04810 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 4e-3 44 Os11g0186300 AK109545.1 - Putative methyltransferase DUF248 family protein 2e-9 At2g34300 dehydration-responsive protein-related C.G. S.X.
0.01 1e-2 42 Os10g0464800 9638.m02851 - - 2e-1 At1g07135 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-1 38 Arabidopsis thaliana At3g05870 819756 APC11 Subunit of the anaphase promoting complex, a ubiquitin ligase complex that regulates progression through the cell cycle. - - - C.G. S.X.
0.10 3e-9 63 Glycine max Gma.5996.1.S1_a_at CD408411 - - 6e-21 At3g05870 APC11 C.G. S.X.
0.03 6e-2 38 Hordeum vulgare Contig20848_at Contig20848 - - 1e-3 At2g35960 NHL12 C.G. S.X.
0.14 3e-12 73 Populus trichocarpa PtpAffx.126970.1.S1_at CV277029 - - 3e-30 At3g05870 APC11 C.G. S.X.
0.27 2e-80 299 Triticum aestivum Ta.14091.1.S1_at CA665801 - - 9e-5 At3g05870 APC11 C.G. S.X.
0.14 1e-14 79 Vitis vinifera 1611689_at CB980747 hypothetical protein LOC100258557 - 8e-39 At3g05870 APC11 C.G. S.X.
0.26 8e-69 260 Zea mays Zm.4575.1.A1_at AI737153 anaphase-promoting complex subunit 11 - 3e-14 At3g05870 APC11 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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