Gene omics information

Query gene ID	Os03g0300900
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.6	Os03g0300900	AK119594.1	-	Glycosyl transferase, family 8 protein	5e-9	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os01g0675500	AK069674.1	-	Glycoprotein-specificUDP-glucuronyltransferase-like protein	8e-5	At1g27600	glycosyl transferase family 43 protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	36.3	Os12g0104700	AK067342.1	-	Protein of unknown function DUF231 domaincontaining protein	6e-5	At1g78710	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	Os02g0329800	AK070014.1	-	Protein of unknown function DUF563 family protein	3e-1	At3g18170	transferase, transferring glycosyl groups	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	24.1	Os06g0687900	AK066791.1	-	Glycosyl transferase, family 43 protein	1e-1	At4g36890	IRX14 (irregular xylem 14)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	17.9	Os02g0518100	AK103390.1	-	Protein of unknown function DUF803 family protein	5e-21	At3g26670	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	Os06g0126500	AK065197.1	-	Apoptosis regulator Bcl-2 protein, BAG domaincontaining protein	1e-2	At1g04445	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	Os06g0656500	AK068985.1	-	-	2e-2	At3g21240	4CL2 (4-COUMARATE:COA LIGASE 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	Os01g0921300	AK119614.1	-	Exostosin-like family protein	2e-7	At1g67410	exostosin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	97.0	GSM278846	WuYun3-RSV infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.1	96.6	GSM302918	leaf_rep1	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
4.7	96.4	GSM278849	WuYun3-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.7	96.4	GSM359921	Pokkali root, control, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
4.6	96.3	GSM278853	KT95-418-non-infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.5	96.3	GSM302919	leaf_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
4.2	96.0	GSM302923	seedling_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
4.0	95.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.0	95.9	GSM278855	KT95-418-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
3.9	95.8	GSM278845	WuYun3-RSV infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-31	139	Os03g0359600	AK072250.1	-	Avr9/Cf-9 rapidly elicited protein 231	6e-5	At1g13250	GATL3 (Galacturonosyltransferase-like 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	1e-17	93	Os06g0247000	9634.m01370	-	Avr9/Cf-9 rapidly elicited protein 231	1e-2	At3g50760	GATL2 (Galacturonosyltransferase-like 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	3e-18	95	Os07g0646800	AK071716.1	-	Avr9/Cf-9 rapidly elicited protein 231	1e-2	At3g50760	GATL2 (Galacturonosyltransferase-like 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	8e-6	54	Os02g0739400	AK070652.1	-	Avr9/Cf-9 rapidly elicited protein 231 precursor	1e-2	At3g50760	GATL2 (Galacturonosyltransferase-like 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	1e-10	69	Os10g0454000	AK106252.1	-	-	1e-5	At1g19300	PARVUS (PARVUS)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-5	52	Os04g0392000	9632.m03064	-	-	4e-3	At2g35960	NHL12	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	5e-9	63	Arabidopsis thaliana	At3g62660	825440	GATL7 (Galacturonosyltransferase-like 7)	Encodes a protein with putative galacturonosyltransferase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	1e-19	99	Glycine max	Gma.16749.1.S1_at	CD407063	-	-	3e-18	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	C.G.	S.X.	Please select
0.17	3e-67	256	Hordeum vulgare	HVSMEc0009L17r2_at	HVSMEc0009L17r2	-	-	3e+0	At1g04778	unknown protein	C.G.	S.X.	Please select
0.07	4e-10	67	Populus trichocarpa	PtpAffx.25163.2.A1_at	CV230336	glycosyltransferase, CAZy family GT8	-	7e-21	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	8e-94	345	Triticum aestivum	TaAffx.85163.1.S1_at	CA622273	-	-	1e-6	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	C.G.	S.X.	Please select
0.03	1e-12	73	Vitis vinifera	1615986_at	CF214784	hypothetical protein LOC100265777	-	1e+0	At1g13250	GATL3 (Galacturonosyltransferase-like 3)	C.G.	S.X.	Please select
0.10	2e-18	93	Zea mays	Zm.1452.1.A1_at	CA403441	hypothetical protein LOC100191570	-	9e-3	At3g50760	GATL2 (Galacturonosyltransferase-like 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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