CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0297700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os03g0297700 AK120200.1 - The start codon is not identified. 3e+0 At5g10310 unknown protein S.X. H.G.
0.50 68.0 Os02g0468200 AK103767.1 - Protein of unknown function DUF652 family protein 3e+0 At2g34570 MEE21 (maternal effect embryo arrest 21) S.X. H.G.
0.14 9.3 Os05g0163100 AK071548.1 - Nucleic acid binding protein-like 6e-1 At5g05610 AL1 (ALFIN-LIKE 1) S.X. H.G.
0.13 8.2 Os10g0422300 NM_196549.1 - TPR-like domain containing protein 4e-6 At5g26110 ATP binding / catalytic/ protein kinase S.X. H.G.
0.12 7.2 Os04g0663200 AK105958.1 - - 7e-1 At5g38020 S-adenosyl-L-methionine:carboxyl methyltransferase family protein S.X. H.G.
0.07 3.7 Os01g0918500 AK072446.1 - Conserved hypothetical protein 4e-1 At1g09580 emp24/gp25L/p24 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.3 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.5 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
5.3 96.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3 96.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
4.9 96.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
4.8 96.5 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-28 129 Os02g0293400 AK072985.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 6e-45 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.05 1e-19 99 Os01g0234900 NM_188653.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 1e-38 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.04 3e-20 101 Os05g0238200 9633.m01306 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5) 6e-20 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.02 2e-2 42 Os01g0205700 AK099863.1 - Shaggy-related protein kinase NtK-1 (EC 2.7.1.-) 5e-107 At1g06390 GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) C.G. S.X.
0.01 5e-3 44 Os08g0467300 AK105541.1 - ANTH domain containing protein 1e-2 At1g25240 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related C.G. S.X.
0.01 2e-2 42 Os05g0207500 AK102147.1 - Shaggy-related protein kinase eta (EC 2.7.1.-)(ASK-eta) 2e-75 At1g06390 GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At5g10310 830895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.02 4e+0 34 Glycine max PsAffx.psZS002xI15f_at PsAffx.psZS002xI15f - - 1e+1 At5g62100 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) C.G. S.X.
0.05 4e-22 105 Hordeum vulgare Contig6334_at Contig6334 - - 6e-57 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.07 4e-3 44 Populus trichocarpa PtpAffx.131813.1.S1_at DN501567 hypothetical protein - 2e-9 At1g62350 - C.G. S.X.
0.46 7e-109 395 Triticum aestivum TaAffx.12831.1.S1_at BJ229300 - - 6e-3 At3g46640 PCL1 (PHYTOCLOCK 1) C.G. S.X.
0.04 2e-4 46 Vitis vinifera 1609250_at Y18471.1 SINA1p - 2e-60 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.06 6e-18 91 Zea mays Zm.378.1.S1_at CO532007 seven in absentia homolog - 3e-25 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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