CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0289800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os03g0289800 AK069008.1 - Isopenicillin N synthase family protein 2e-5 At5g05600 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.57 77.0 Os09g0455300 AK070458.1 - Symbiotic ammonium transporter 1e-5 At3g50330 HEC2 (HECATE 2) S.X. H.G.
0.50 68.0 Os03g0386000 AK072984.1 - WD domain protein-like 3e-5 At1g78070 - S.X. H.G.
0.44 58.1 Os05g0211100 AK107185.1 - Cytochrome P450 51 (EC 1.14.13.70) (CYPLI)(P450-LIA1) (Obtusifoliol 14-alpha demethylase) 3e-3 At5g04330 cytochrome P450, putative / ferulate-5-hydroxylase, putative S.X. H.G.
0.36 44.0 Os07g0686600 AK108527.1 - VQ domain containing protein 6e-1 At2g40220 ABI4 (ABA INSENSITIVE 4) S.X. H.G.
0.20 16.5 Os03g0122300 AK068438.1 - Flavanone 3-hydroxylase-like protein 4e-2 At5g24530 DMR6 (DOWNY MILDEW RESISTANT 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
62.0 99.9 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
49.9 99.9 GSM278853 KT95-418-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
31.1 99.7 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
22.0 99.3 GSM278846 WuYun3-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
18.9 99.0 GSM278848 WuYun3-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
17.8 98.9 GSM278854 KT95-418-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.2 98.0 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.2 98.0 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.0 98.0 GSM278845 WuYun3-RSV infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.9 98.0 GSM278847 WuYun3-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 6e-25 117 Os01g0832600 AK106774.1 - Isopenicillin N synthase family protein 5e-5 At5g05600 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.22 7e-34 147 Os05g0127500 AK068517.1 - Leucoanthocyanidin dioxygenase-like protein 8e-1 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) C.G. S.X.
0.10 8e-46 186 Os03g0365200 AK099802.1 - Peptidase C48, SUMO/Sentrin/Ubl1 family protein 3e-2 At2g43110 unknown protein C.G. S.X.
0.08 4e-57 224 Os08g0337700 AK100576.1 - RabGAP/TBC domain containing protein 3e-20 At3g07890 RabGAP/TBC domain-containing protein C.G. S.X.
0.08 4e-54 214 Os04g0543900 AK063467.1 - Glutamate dehydrogenase 2 (EC 1.4.1.3) (GDH 2) 5e-61 At5g07440 GDH2 (GLUTAMATE DEHYDROGENASE 2) C.G. S.X.
0.06 1e-38 163 Os04g0278200 AK065786.1 - Retroelement pol polyprotein-like 1e-1 At5g08530 CI51 (51 kDa subunit of complex I) C.G. S.X.
0.06 3e-24 115 Os03g0756400 AK099399.1 - Conserved hypothetical protein 2e-4 At5g27210 - C.G. S.X.
0.04 8e-8 59 Os02g0767300 AK072697.1 - Flavonol synthase (EC 1.14.11.-) (FLS) (CitFLS) 4e-5 At5g08640 FLS (FLAVONOL SYNTHASE) C.G. S.X.
0.04 1e-6 56 Os02g0630300 AK059045.1 - 2OG-Fe(II) oxygenase domain containing protein 4e-3 At1g06650 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-5 52 Arabidopsis thaliana At5g05600 830443 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFM - - - C.G. S.X.
0.04 5e-3 44 Glycine max Gma.2316.1.S1_at CD401164 - - 1e-4 At5g05600 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.28 1e-69 264 Hordeum vulgare Contig12422_at Contig12422 leucoanthocyanidin dioxygenase-like protein - 2e+0 At2g36690 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.02 1e-3 46 Populus trichocarpa PtpAffx.204990.1.S1_at pmrna9881 hypothetical protein - 2e-3 At4g25300 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.33 2e-150 533 Triticum aestivum Ta.25763.1.S1_at CD373822 - - 6e+0 At3g58470 methyltransferase/ nucleic acid binding C.G. S.X.
0.02 7e-2 38 Vitis vinifera 1614441_at BQ798241 hypothetical protein LOC100264239 - 1e-3 At3g11180 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.04 4e-4 46 Zea mays Zm.8714.1.A1_at AY359573.1 acc oxidase - 7e-10 At1g05010 EFE (ETHYLENE-FORMING ENZYME) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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