CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0285800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os03g0285800 AF332873.1 - MAP kinase 1 (MAP kinase MAPK5a) 8e-4 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) S.X. H.G.
0.80 94.6 Os02g0165100 AK066645.1 - Protein kinase domain containing protein 2e-4 At2g35620 FEI2 (FEI 2) S.X. H.G.
0.53 71.3 Os10g0580900 AK072734.1 - Conserved hypothetical protein 5e-8 At4g25030 unknown protein S.X. H.G.
0.50 68.0 Os04g0619400 AK066337.1 - Protein kinase domain containing protein 9e-7 At1g16670 protein kinase family protein S.X. H.G.
0.50 68.0 Os03g0302200 AK120853.1 - Zn-finger-like, PHD finger domain containingprotein 3e-14 At3g05670 PHD finger family protein S.X. H.G.
0.32 36.3 Os02g0205500 AK067907.1 - Naringenin-chalcone synthase family protein 7e-5 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.3 99.0 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
18.7 99.0 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
17.4 98.9 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
15.7 98.7 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
9.2 97.9 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
9.0 97.8 GSM159209 Seed (S1, 0 - 2 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
8.9 97.8 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
8.8 97.8 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
8.5 97.7 GSM159205 Inflorescence (P6, 22 - 30 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
8.3 97.7 GSM159206 Inflorescence (P6, 22 - 30 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 4e-32 141 Os06g0154500 AK111691.1 - Mitogen-activated protein kinase (MAP kinase 6) 5e-36 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) C.G. S.X.
0.04 1e-10 69 Os08g0157000 9636.m00537 - Mitogen-activated protein kinase 4 9e-13 At1g01560 ATMPK11 C.G. S.X.
0.04 1e-4 50 Os12g0424700 9640.m02252 - Protein kinase domain containing protein 8e+0 At3g01120 MTO1 (METHIONINE OVERACCUMULATION 1) C.G. S.X.
0.02 4e-4 48 Os09g0443600 9637.m02378 - - 4e-2 At1g23710 unknown protein C.G. S.X.
0.01 3e-2 42 Os01g0957100 AK122121.1 - Protein kinase domain containing protein 2e+0 At3g45230 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 3e-2 42 Os04g0691100 AB125306.1 - Protein kinase 3 1e-2 At1g10940 SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4) C.G. S.X.
0.01 3e-2 42 Os06g0191900 9634.m00875 - Protein kinase family protein 8e-8 At4g31230 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 8e-4 46 Arabidopsis thaliana At2g43790 818982 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development. - - - C.G. S.X.
0.10 1e-18 95 Glycine max PsAffx.C11000081_at PsAffx.C11000081 - - 4e-2 At4g11330 ATMPK5 (MAP KINASE 5) C.G. S.X.
0.62 0 1251 Hordeum vulgare Contig5531_at Contig5531 - - 6e-8 At3g45640 ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) C.G. S.X.
0.10 3e-7 57 Populus trichocarpa PtpAffx.41158.1.S1_s_at DN491953 hypothetical protein - 3e-96 At3g45640 ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) C.G. S.X.
0.61 0 1255 Triticum aestivum Ta.236.1.S1_at AF079318.1 MAP kinase homolog - 3e-6 At3g45640 ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1614195_at CD798878 similar to peroxisomal targeting signal 1 receptor; PTS1 receptor; Pex5p - 1e+0 At2g18270 unknown protein C.G. S.X.
0.55 0 785 Zea mays Zm.217.1.S1_at AB016801.1 MAP kinase 4 - 6e-2 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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