CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0281600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 62.3 Os03g0281600 AK070260.1 - Ca2+-ATPase 1e-63 At1g07670 calcium-transporting ATPase S.X. H.G.
0.70 88.4 Os01g0585700 NM_192531.1 - SIT4 phosphatase-associated protein family protein 2e-17 At1g30470 SIT4 phosphatase-associated family protein S.X. H.G.
0.61 81.2 Os05g0562400 AK121237.1 - DDT domain containing protein 2e-7 At1g28420 HB-1 (homeobox-1) S.X. H.G.
0.58 77.0 Os03g0750800 AK061386.1 - Transcriptional adaptor ADA2b (AT4g16420/dl4235c) 9e-11 At4g16420 ADA2B (HOMOLOG OF YEAST ADA2 2B) S.X. H.G.
0.56 76.3 Os03g0395600 AK063311.1 - Hypothetical protein 4e-1 At1g30260 - S.X. H.G.
0.56 76.3 Os12g0102400 AK103750.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 6e-16 At3g45630 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.55 73.7 Os07g0495900 AK060293.1 - Regulator of nonsense transcripts 1 homolog 1e-6 At5g47010 LBA1 (LOW-LEVEL BETA-AMYLASE 1) S.X. H.G.
0.53 71.3 Os03g0786800 AK059186.1 - The start codon is not identified. 4e-54 At5g46210 CUL4 (CULLIN4) S.X. H.G.
0.44 58.1 Os04g0440100 AK105415.1 - Nonsense-mediated decay UPF3 domain containingprotein 2e-9 At1g33980 Smg-4/UPF3 family protein S.X. H.G.
0.44 58.1 Os09g0281600 AK067020.1 - SWAP/Surp domain containing protein 6e-12 At3g52120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.8 98.1 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.4 95.2 GSM67054 FL478 control replicate 3 GSE3053 Rice salt expression
3.2 94.9 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
3.2 94.9 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.1 94.8 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.0 94.6 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.9 94.5 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.8 94.3 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.8 94.3 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.7 94.1 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 3e-47 192 Os05g0120700 AK062874.1 - Cation transporting ATPase, C-terminal domaincontaining protein 2e-23 At1g07810 ECA1 (ER-TYPE CA2+-ATPASE 1) C.G. S.X.
0.09 2e-54 216 Os11g0257000 9639.m01393 - - 1e+0 At4g40042 peptidase C.G. S.X.
0.02 1e-6 57 Os03g0616400 AK071938.1 - Plasma membrane Ca2+-ATPase 4e-26 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) C.G. S.X.
0.01 2e-8 63 Os03g0730800 AK073220.1 - Calcium-transporting ATPase 3, endoplasmicreticulum-type (EC 3.6.3.8) 2e-46 At1g10130 ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) C.G. S.X.
0.01 4e-3 46 Os03g0100800 AK068699.1 - Plasma membrane H+-ATPase 2e-31 At5g62670 AHA11 (Arabidopsis H(+)-ATPase 11) C.G. S.X.
0.01 1e-2 44 Os07g0191200 D31843.1 - Plasma membrane H+ ATPase (EC 3.6.3.6) 7e-83 At5g62670 AHA11 (Arabidopsis H(+)-ATPase 11) C.G. S.X.
0.01 6e-2 42 Os03g0194300 9631.m00886 - Protein of unknown function DUF568 domaincontaining protein 4e-5 At2g04850 auxin-responsive protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 1e-63 246 Arabidopsis thaliana At1g07670 837280 calcium-transporting ATPase F:calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:endoplasmic reticulum, plasma membrane;BMOFPAV - - - C.G. S.X.
0.16 1e-36 157 Glycine max Gma.10964.1.S1_at AW277625 - - 8e-13 At1g07810 ECA1 (ER-TYPE CA2+-ATPASE 1) C.G. S.X.
0.61 0 2169 Hordeum vulgare Contig8728_at Contig8728 - - 2e-36 At1g07810 ECA1 (ER-TYPE CA2+-ATPASE 1) C.G. S.X.
0.32 3e-46 188 Populus trichocarpa PtpAffx.204992.1.S1_at pmrna9883 endoplasmic reticulum [ER]-type calcium ATPase - 3e-116 At1g07810 ECA1 (ER-TYPE CA2+-ATPASE 1) C.G. S.X.
0.37 0 971 Triticum aestivum Ta.3686.1.S1_at CA673027 - - 2e-34 At1g07670 calcium-transporting ATPase C.G. S.X.
0.11 1e-17 91 Vitis vinifera 1606654_at CF568782 - - 2e-23 At1g07670 calcium-transporting ATPase C.G. S.X.
0.28 6e-20 99 Zea mays Zm.509.1.S1_at AF096871.1 calcium pump1 - 3e-11 At1g07810 ECA1 (ER-TYPE CA2+-ATPASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
L GO:0006816 The directed movement of calcium (Ca) ions into, out of, within or between cells.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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