CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0278700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 76.3 Os03g0278700 9631.m01671 - Zn-finger-like, PHD finger domain containingprotein 2e+0 At1g08310 esterase/lipase/thioesterase family protein S.X. H.G.
0.67 87.2 Os11g0708600 AK066096.1 - RECQL1 protein 6e-43 At1g31360 RECQL2 (ARABIDOPSIS RECQ HELICASE L2) S.X. H.G.
0.46 60.9 Os06g0315900 AK100030.1 - The start codon is not identified. 2e-1 At3g50140 unknown protein S.X. H.G.
0.40 51.1 Os10g0363100 AK061910.1 - Glycosyltransferase QUASIMODO1 (EC 2.4.1.-) 3e-20 At4g38270 GAUT3 (Galacturonosyltransferase 3) S.X. H.G.
0.29 31.1 Os05g0290300 CB633316 - Hypothetical protein 6e+0 At4g17200 F-box family protein S.X. H.G.
0.21 17.9 Os06g0163500 AK071415.1 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 5e-28 At5g19660 S1P (SITE-1 PROTEASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.2 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-2 42 Os08g0429800 9636.m03334 - - 1e-5 At5g52400 CYP715A1 C.G. S.X.
0.01 8e-1 38 Os01g0815800 AK058612.1 - - 2e-31 At3g53020 STV1 (SHORT VALVE1) C.G. S.X.
0.01 8e-1 38 Os05g0419200 AK071273.1 - Protein of unknown function DUF647 family protein 3e-25 At5g49820 emb1879 (embryo defective 1879) C.G. S.X.
0.01 8e-1 38 Os08g0289100 9636.m01887 - - 5e+0 At5g03455 CDC25 C.G. S.X.
0.01 8e-1 38 Os09g0524800 AK105833.1 - Apoptosis regulator Bcl-2 protein, BAG domaincontaining protein 3e-1 At5g40630 ubiquitin family protein C.G. S.X.
0.01 8e-1 38 Os10g0482400 NM_197049.1 - - 2e-7 At5g25260 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Arabidopsis thaliana At1g08310 837351 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:unknown;BPOMFA - - - C.G. S.X.
0.01 2e+0 36 Glycine max GmaAffx.71413.1.S1_at BI699409 - - 3e-1 At3g43880 unknown protein C.G. S.X.
0.12 2e-29 131 Hordeum vulgare Contig16246_at Contig16246 - - 6e+0 Atcg00710 - C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.207205.1.S1_s_at pmrna14301 hypothetical protein - 1e-89 At1g50140 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
0.01 4e-1 38 Triticum aestivum TaAffx.53879.1.S1_at CA688160 - - 9e-1 At5g45090 AtPP2-A7 (Phloem protein 2-A7) C.G. S.X.
0.01 5e-1 36 Vitis vinifera 1608430_at CB977881 - - 1e+0 At1g60600 ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4) C.G. S.X.
0.01 7e-1 36 Zea mays Zm.5687.1.A1_at AI629947 - - 5e-4 At1g30270 CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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